Detail information of GWHGAAZE029728


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271429.11.89766E-79PREDICTED: probable CCR4-associated factor 1 homolog 11 [Vitis vinifera]
Swissprottr|Q9FMS6|CAF1K_ARATH2E-74Probable CCR4-associated factor 1 homolog 11
trEMBLtr|A5AU84|A5AU84_VITVI4E-78Putative uncharacterized protein {ECO:0000313|EMBL:CAN78317.1}
TAIR10AT5G22250.18E-61Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3190691931907557+
GWHAAZE00000009mRNA3190691931907557+
GWHAAZE00000009exon3190691931907557+
GWHAAZE00000009CDS3190691931907557+
Transcript Sequence

Network for GWHGAAZE029728

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.965
SRR3591706second leaf12.280
SRR3591707mature leaf12.301
SRR3591708Shoot apex16.181
SRR3591709Stem8.948
SRR3591710White floral bud9.315
SRR3591711White flower10.175
SRR3591712Green floral bud7.725
SRR3591713Yellow flower8.339
SRP173429 SRR8316895Juvenile bud stage 8.017
SRR8316896Juvenile bud stage 12.072
SRR8316897Juvenile bud stage 7.462
SRR8316894Third green stage 6.446
SRR8316900Third green stage 9.645
SRR8316901Third green stage 9.880
SRR8316898Complete white stage 2.464
SRR8316899Complete white stage 12.855
SRR8316903Complete white stage 5.179
SRR8316902Silver flowering stage1.804
SRR8316904Silver flowering stage4.704
SRR8316905Silver flowering stage1.777
SRR8316906Gold flowering stage 5.786
SRR8316907Gold flowering stage 5.440
SRR8316908Gold flowering stage 4.038
SRP132670SRR6706286Control11.192
SRR6706287Light intensity 50%11.328
SRR6706288Light intensity 20%10.209
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.146
CNS0095593Slightly white alabastrum(diploid) 216.054
CNS0095594Slightly white alabastrum(diploid) 313.926
CNS0095595Whole white alabastrum(diploid) 212.249
CNS0095596Whole white alabastrum(diploid) 39.412
CNS0095597Whole white alabastrum(diploid) 411.767
CNS0095598Silvery flower (diploied) 119.265
CNS0095599Silvery flower (diploied) 221.192
CNS0095600Silvery flower (diploied) 35.434
CNS0095601Golden flower (diploid) 115.856
CNS0095602Golden flower (diploid) 28.404
CNS0095603Golden flower (diploid) 39.622
CNS0095604Slightly white alabastrum(tetraploid) 115.882
CNS0095605Slightly white alabastrum(tetraploid) 213.686
CNS0095606Slightly white alabastrum(tetraploid) 317.945
CNS0095607Whole white alabastrum(tetraploid) 19.070
CNS0095608Whole white alabastrum(tetraploid) 25.772
CNS0095609Whole white alabastrum(tetraploid) 310.469
CNS0095610Silvery flower (tetraploid) 16.352
CNS0095611Silvery flower (tetraploid) 25.034
CNS0095612Silvery flower (tetraploid) 33.499
CNS0095613Golden flower (tetraploid) 17.074
CNS0095614Golden flower (tetraploid) 28.257
CNS0095615Golden flower (tetraploid) 31.955
CRA001975CRR073297Stem 115.165
CRR073298Stem 212.312
CRR073299Stem 32.391
CRR073300Leaf 115.817
CRR073301Leaf 213.096
CRR073302Leaf 34.410
CRR073303Juvenile bud 13.490
CRR073304Juvenile bud 20.543
CRR073305Juvenile bud 33.263
CRR073306Third green 10.123
CRR073307Third green 20.903
CRR073308Third green 30.377
CRR073309Second white 10.287
CRR073310Second white 20.453
CRR073311Second white 30.251
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.098
CRR073315Gold flowering 18.379
CRR073316Gold flowering 214.211
CRR073317Gold flowering 31.972
CRR073318Tawny withering 17.367
CRR073319Tawny withering 210.025
CRR073320Tawny withering 34.484