Detail information of GWHGAAZE029733


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009770890.12.3705E-161PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Nicotiana sylvestris]
Swissprottr|P27524|CB4A_SOLLC2E-154Chlorophyll a-b binding protein CP24 10A, chloroplastic (Precursor)
trEMBLtr|Q0PWS6|Q0PWS6_TOBAC9E-162Chloroplast pigment-binding protein CP24 {ECO:0000313|EMBL:ABG73416.1}
TAIR10AT1G15820.11E-112light harvesting complex photosystem II subunit 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3202594832027000+
GWHAAZE00000009mRNA3202594832027000+
GWHAAZE00000009exon3202594832026174+
GWHAAZE00000009exon3202645132027000+
GWHAAZE00000009CDS3202594832026174+
GWHAAZE00000009CDS3202645132027000+
Transcript Sequence

Network for GWHGAAZE029733

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind702461.70E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08917LHCB6 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf303.839
SRR3591706second leaf1565.485
SRR3591707mature leaf1506.248
SRR3591708Shoot apex576.794
SRR3591709Stem187.235
SRR3591710White floral bud9.773
SRR3591711White flower17.348
SRR3591712Green floral bud12.537
SRR3591713Yellow flower1.144
SRP173429 SRR8316895Juvenile bud stage 48.455
SRR8316896Juvenile bud stage 29.908
SRR8316897Juvenile bud stage 17.910
SRR8316894Third green stage 13.594
SRR8316900Third green stage 14.627
SRR8316901Third green stage 10.273
SRR8316898Complete white stage 1.524
SRR8316899Complete white stage 13.344
SRR8316903Complete white stage 6.845
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.320
SRR8316905Silver flowering stage0.006
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.921
SRP132670SRR6706286Control22.104
SRR6706287Light intensity 50%13.618
SRR6706288Light intensity 20%12.336
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.348
CNS0095593Slightly white alabastrum(diploid) 231.242
CNS0095594Slightly white alabastrum(diploid) 326.929
CNS0095595Whole white alabastrum(diploid) 213.781
CNS0095596Whole white alabastrum(diploid) 310.532
CNS0095597Whole white alabastrum(diploid) 46.174
CNS0095598Silvery flower (diploied) 179.773
CNS0095599Silvery flower (diploied) 256.779
CNS0095600Silvery flower (diploied) 38.135
CNS0095601Golden flower (diploid) 165.069
CNS0095602Golden flower (diploid) 235.552
CNS0095603Golden flower (diploid) 332.007
CNS0095604Slightly white alabastrum(tetraploid) 182.558
CNS0095605Slightly white alabastrum(tetraploid) 285.111
CNS0095606Slightly white alabastrum(tetraploid) 3154.465
CNS0095607Whole white alabastrum(tetraploid) 147.934
CNS0095608Whole white alabastrum(tetraploid) 213.074
CNS0095609Whole white alabastrum(tetraploid) 326.618
CNS0095610Silvery flower (tetraploid) 15.385
CNS0095611Silvery flower (tetraploid) 224.973
CNS0095612Silvery flower (tetraploid) 31.717
CNS0095613Golden flower (tetraploid) 10.609
CNS0095614Golden flower (tetraploid) 220.728
CNS0095615Golden flower (tetraploid) 34.198
CRA001975CRR073297Stem 16.156
CRR073298Stem 25.257
CRR073299Stem 310.692
CRR073300Leaf 10.634
CRR073301Leaf 20.686
CRR073302Leaf 30.303
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.380
CRR073305Juvenile bud 30.117
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.031
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 115.276
CRR073316Gold flowering 210.798
CRR073317Gold flowering 312.874
CRR073318Tawny withering 12.544
CRR073319Tawny withering 20.574
CRR073320Tawny withering 32.691