Gene detail

Detail information of GWHGAAZE029737

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042502.1	0	DNA-directed RNA polymerase family protein [Theobroma cacao]
COG	YP_002429056.1	3E-34	DNA-directed RNA polymerase subunit D
Swissprot	tr\|Q39211\|NRPB3_ARATH	5E-174	DNA-directed RNA polymerases II, IV and V subunit 3
trEMBL	tr\|A0A061E7U0\|A0A061E7U0_THECC	0	DNA-directed RNA polymerase family protein {ECO:0000313\|EMBL:EOX98333.1}
TAIR10	AT2G15430.1	2E-131	DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32119050	32124743	-
GWHAAZE00000009	mRNA	32119050	32124743	-
GWHAAZE00000009	exon	32124608	32124743	-
GWHAAZE00000009	exon	32123149	32123446	-
GWHAAZE00000009	exon	32122450	32122687	-
GWHAAZE00000009	exon	32121432	32121696	-
GWHAAZE00000009	exon	32119050	32119120	-
GWHAAZE00000009	CDS	32124608	32124743	-
GWHAAZE00000009	CDS	32123149	32123446	-
GWHAAZE00000009	CDS	32122450	32122687	-
GWHAAZE00000009	CDS	32121432	32121696	-
GWHAAZE00000009	CDS	32119050	32119120	-

Transcript Sequence
>GWHTAAZE029771 ATGGAAGGAATGTCAAACCAACGATTCCCCAAAGTGAAAATCAGAGAACTAAAAAACGACTACGTGAAATTCGAGCTCCGGGACACCGACGCCAGCATCGCCAACGCTCTCCGCCGTGTTATGATAGCTGAGGTACATCTGGTGGAGATCGATGTCAACTCGACGGTGCTCAACGACGAGTTCATTGCCCACCGGCTGGGGTTGATCCCGCTGACGAGCGAGCGGGCGATGAGCATGAGGTTCTCGCGCGACTGTGACGCGTGTGATGGCGATGGACAGTGTGAGTATTGCTCCGTCGAGTTCCATTTGAGGGCCAAGTGCATGAATGATCAGACGCTCTATGTTACGAGCAATGATTTGTATAGTTCGGATCATACGGTTGTTCCGGTAGAATTCACTGATACTCCGATCAACGACATTAATGATGAACTGAGGGGAATAACAATAGTGAAGCTAAGGAGAGGGCAAGAGCTGAACTTGAGAGCCATAGCAAGAAAAGGAATAGGGAAAGATCATGCAAAATGGTCACCAGCTGCAACAGTTACCTTCATGTTTGAACCAGAGATTCATATCAATGAAGAATTGATGGAGACTCTAACTCTTGAAGAAAAAACAAGCTTAGTTGAAAGTTGTCCTACTAAAGTATTTGACATTGATCCTGACACCCATCAGGTGGTCGTGGTTGATCGCGAGGCATACATTTACGAAGATGAAATTCTGAGGAAAGCCGAATCAATGGGAAAGCCTGGGCTTTTAGATATTTATTGTAACGAAGAAAATTTTATTTTCACAGTTGAAACAACCGGCGCAATCAGGGCTTCTCAGCTAGTGATCAATGCCATTGATGTCTTGAAACATAAATTGGACGCAATTCGCCTATCAGATGACACTGTAGAAGCCGACGACCAGTTTGGAGAATTAGGTGCACATTTGCGAGGGACACTTGAGGCCTACAAGGCTACAATGCAACCCACCCCTCAACTTCTCATGTATCGTGTTAAGCATTGA

Network for GWHGAAZE029737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01193.25	RNA_pol_L	23	288	3.10E-16
PF01000.27	RNA_pol_A_bac	48	176	1.40E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03011	RPB3, POLR2C	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.098
	SRR3591710	White floral bud	0.591
	SRR3591711	White flower	0.084
	SRR3591712	Green floral bud	3.520
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	29.799
	SRR8316896	Juvenile bud stage	57.508
	SRR8316897	Juvenile bud stage	19.126
	SRR8316894	Third green stage	14.108
	SRR8316900	Third green stage	7.272
	SRR8316901	Third green stage	12.550
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.395
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.001
SRP132670	SRR6706286	Control	3.833
	SRR6706287	Light intensity 50%	3.600
	SRR6706288	Light intensity 20%	2.105
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.948
	CNS0095593	Slightly white alabastrum(diploid) 2	20.161
	CNS0095594	Slightly white alabastrum(diploid) 3	67.824
	CNS0095595	Whole white alabastrum(diploid) 2	11.366
	CNS0095596	Whole white alabastrum(diploid) 3	16.676
	CNS0095597	Whole white alabastrum(diploid) 4	11.554
	CNS0095598	Silvery flower (diploied) 1	0.175
	CNS0095599	Silvery flower (diploied) 2	0.169
	CNS0095600	Silvery flower (diploied) 3	0.068
	CNS0095601	Golden flower (diploid) 1	0.061
	CNS0095602	Golden flower (diploid) 2	0.033
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.879
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.152
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.011
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.615
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.168
	CNS0095612	Silvery flower (tetraploid) 3	0.565
	CNS0095613	Golden flower (tetraploid) 1	0.099
	CNS0095614	Golden flower (tetraploid) 2	0.134
	CNS0095615	Golden flower (tetraploid) 3	0.107
CRA001975	CRR073297	Stem 1	18.803
	CRR073298	Stem 2	17.133
	CRR073299	Stem 3	13.066
	CRR073300	Leaf 1	4.082
	CRR073301	Leaf 2	5.908
	CRR073302	Leaf 3	4.359
	CRR073303	Juvenile bud 1	0.996
	CRR073304	Juvenile bud 2	0.728
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.312
	CRR073307	Third green 2	0.134
	CRR073308	Third green 3	0.039
	CRR073309	Second white 1	0.044
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.136
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.100
	CRR073315	Gold flowering 1	0.837
	CRR073316	Gold flowering 2	0.104
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	1.068
	CRR073320	Tawny withering 3	0.248