Gene detail

Detail information of GWHGAAZE029747

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285389.1	3.75214E-84	PREDICTED: transcription factor MYB44 [Vitis vinifera]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	2E-70	Transcription factor MYB44
trEMBL	tr\|Q1XAN1\|Q1XAN1_VITVI	1E-88	Sucrose responsive element binding protein {ECO:0000313\|EMBL:AAY28930.1}
TAIR10	AT4G37260.1	4E-61	myb domain protein 73

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32201783	32203178	+
GWHAAZE00000009	mRNA	32201783	32203178	+
GWHAAZE00000009	exon	32201783	32202095	+
GWHAAZE00000009	exon	32202522	32203178	+
GWHAAZE00000009	five_prime_UTR	32201783	32201921	+
GWHAAZE00000009	CDS	32201922	32202095	+
GWHAAZE00000009	CDS	32202522	32203178	+

Transcript Sequence
>GWHTAAZE029781 TCTATCACTCTCTCTAACCGCCTCAATTCAGTTACCATTTCCCCCAAATATCCTTTATAAACCCCTCCGTCACCAAACCTTAACATGTATAGATATATCTCTCTTTTCGACTAATTTAGAAGATATATAGCTGCTGCATATGGGGAAAGATGAGGATCGAATCAAGGGACCTTGGAGCCCCGAGGAGGACGAGTTGCTGAGGCAGCTCGTCCACTGCCACGGGGCTCGTAATTGGACCCTCATTAGCAAGTCCGTTCCCGGGAGATCCGGGAAATCCTGCCGCCTCAGGTGGTGTAATCAGCTCTCCCCGGAGGTGGAGCACCGGCCGTTTACGCAGGAGGAGGACGAGATCATCCTGCAGGCGCAGTTGAGGTATGGCAACAAGTGGGCAACGATCGCGAGGCTGCTCAATGGCCGCACTGACAATGCAATTAAGAATCACTGGAACTCCACACTCAAGCGGAAATGCGCGGTATCAGTCGGTGGAGATGAGCGTCCCGCGACCGTGCTGAAAAGGACAGAGGTTGGTGATGTGAGTGCTAATATGGTGAATCTGTGTGAAAGTCGAGATAGTTCAACGGGATCTGATGTCAGTTATGATTCAGGATATCAGTTAATGAATCTAAACCAGCCTATAGCTAAATCCGGCATGATTGTGCCGTTGATTGAATCGGTAATAAAGCAAGGCGTTGATCCGCCAAAAGCTTTGAGTCTTTCGCTCCCCGGGACTGATTCATATTGTTATGAGATTCGTGATCAGGATATGAATACCGGACAGATTGCGAGTCAGGAGAGTGGCAGGAGCTGTAAGCTGTTTAGGCCGAGTGGTGAAAAGTTGAGCGTTGAAATGATCTCGATGATGCAAGAGATGATTAGGTCAGAAGTGAGAAAGTATATGTCTGGGGTTGAGAACGAGGGTTATGTGAGGAATGCTGGGGTGAAGAGAATTGGTGTTAGGAAAATTGAATGA

Network for GWHGAAZE029747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	9	54	9.80E-18
PF00249.32	Myb_DNA-binding	63	104	7.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.314
	SRR3591706	second leaf	8.064
	SRR3591707	mature leaf	3.539
	SRR3591708	Shoot apex	11.548
	SRR3591709	Stem	25.011
	SRR3591710	White floral bud	18.002
	SRR3591711	White flower	22.124
	SRR3591712	Green floral bud	11.952
	SRR3591713	Yellow flower	10.827
SRP173429	SRR8316895	Juvenile bud stage	67.991
	SRR8316896	Juvenile bud stage	84.559
	SRR8316897	Juvenile bud stage	42.484
	SRR8316894	Third green stage	9.509
	SRR8316900	Third green stage	12.913
	SRR8316901	Third green stage	25.183
	SRR8316898	Complete white stage	1.070
	SRR8316899	Complete white stage	25.541
	SRR8316903	Complete white stage	1.673
	SRR8316902	Silver flowering stage	0.479
	SRR8316904	Silver flowering stage	1.398
	SRR8316905	Silver flowering stage	0.497
	SRR8316906	Gold flowering stage	4.243
	SRR8316907	Gold flowering stage	2.340
	SRR8316908	Gold flowering stage	2.929
SRP132670	SRR6706286	Control	6.233
	SRR6706287	Light intensity 50%	5.394
	SRR6706288	Light intensity 20%	2.859
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.667
	CNS0095593	Slightly white alabastrum(diploid) 2	42.511
	CNS0095594	Slightly white alabastrum(diploid) 3	48.804
	CNS0095595	Whole white alabastrum(diploid) 2	43.219
	CNS0095596	Whole white alabastrum(diploid) 3	9.333
	CNS0095597	Whole white alabastrum(diploid) 4	26.640
	CNS0095598	Silvery flower (diploied) 1	80.207
	CNS0095599	Silvery flower (diploied) 2	71.279
	CNS0095600	Silvery flower (diploied) 3	20.417
	CNS0095601	Golden flower (diploid) 1	45.606
	CNS0095602	Golden flower (diploid) 2	25.966
	CNS0095603	Golden flower (diploid) 3	25.251
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.503
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.536
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.485
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.301
	CNS0095610	Silvery flower (tetraploid) 1	0.583
	CNS0095611	Silvery flower (tetraploid) 2	0.350
	CNS0095612	Silvery flower (tetraploid) 3	4.666
	CNS0095613	Golden flower (tetraploid) 1	1.233
	CNS0095614	Golden flower (tetraploid) 2	1.129
	CNS0095615	Golden flower (tetraploid) 3	1.384
CRA001975	CRR073297	Stem 1	36.758
	CRR073298	Stem 2	27.406
	CRR073299	Stem 3	29.416
	CRR073300	Leaf 1	44.982
	CRR073301	Leaf 2	81.336
	CRR073302	Leaf 3	19.410
	CRR073303	Juvenile bud 1	18.751
	CRR073304	Juvenile bud 2	27.999
	CRR073305	Juvenile bud 3	37.692
	CRR073306	Third green 1	5.294
	CRR073307	Third green 2	11.237
	CRR073308	Third green 3	5.714
	CRR073309	Second white 1	2.350
	CRR073310	Second white 2	8.622
	CRR073311	Second white 3	7.054
	CRR073312	Silver flowering 1	15.925
	CRR073313	Silver flowering 2	8.935
	CRR073314	Silver flowering 3	13.330
	CRR073315	Gold flowering 1	8.065
	CRR073316	Gold flowering 2	14.405
	CRR073317	Gold flowering 3	6.921
	CRR073318	Tawny withering 1	13.990
	CRR073319	Tawny withering 2	44.025
	CRR073320	Tawny withering 3	14.927