Gene detail

Detail information of GWHGAAZE029748

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABF48495.1	0	putative cinnamyl alcohol dehydrogenase [Linum usitatissimum]
COG	YP_003897964.1	3E-115	alcohol dehydrogenase
Swissprot	tr\|Q2KNL5\|CADH1_OCIBA	0	Cinnamyl alcohol dehydrogenase 1
trEMBL	tr\|Q1HGA8\|Q1HGA8_LINUS	0	Putative cinnamyl alcohol dehydrogenase {ECO:0000313\|EMBL:ABF48495.1}
TAIR10	AT3G19450.1	4E-143	GroES-like zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32208662	32212929	-
GWHAAZE00000009	mRNA	32208662	32212929	-
GWHAAZE00000009	exon	32212790	32212929	-
GWHAAZE00000009	exon	32212574	32212687	-
GWHAAZE00000009	exon	32211484	32211711	-
GWHAAZE00000009	exon	32210394	32210833	-
GWHAAZE00000009	exon	32208662	32208962	-
GWHAAZE00000009	five_prime_UTR	32212882	32212929	-
GWHAAZE00000009	CDS	32212790	32212881	-
GWHAAZE00000009	CDS	32212574	32212687	-
GWHAAZE00000009	CDS	32211484	32211711	-
GWHAAZE00000009	CDS	32210394	32210833	-
GWHAAZE00000009	CDS	32208763	32208962	-
GWHAAZE00000009	three_prime_UTR	32208662	32208762	-

Transcript Sequence
>GWHTAAZE029782 AATTCTCTTTCTGCAACTTTAACCAAAGAAGAAAAAAAGAGGGGGGAAATGGGAAGCATAAAAGCCGCAGATAGAACAACAATAGGGTGGGCAGCAACTGATCCCTCCGGGGTTCTATCCCCATATACCTATACTCTCAGAAATACAGGTCCAGATGATGTATTCGTGAAGGTGATTTGCTGTGGGATTTGCCATACTGATATTCATCAGATCAAAAATGATCTCGGCATGTCCAATTACCCCATGGTTCCTGGGCATGAAGTGGTTGGTGAAGTGATAGAGGTGGGATCAGATGTGAGCAGGTTCAGGGTAGGTGAATACGTGGGCGTAGGCTGCATCGTTGGATCCTGCAACAGCTGCCGTCCTTGCGAATCAGATCTAGAGCAGTACTGCAACAAGAAGGTCTGGTCCTACAATGACGTCTATAGTGATGGCAAGCCCACTCAAGGAGGATTCGCTGGCTCCATGGTTGTCCATCAAAAGTTTGTGGTGAAAATACCAGAGGGAATGGACCCAGAGCAAGCGGCACCACTACTATGCGCCGGAGTAACAGTGTACAGCCCACTGAACCACTTTGGTCTAAAACAGAGTGGCCTGAGAGGTGCCATTTTGGGACTAGGTGGGGTAGGTCACATGGGTGTGAAGATAGCCAAGGCAATGGGTCATCATGTGACTGTCATTAGCTCTTCAGACAAGAAGAGAGTCGAGGCTCTTGACCACTTGGGTGCGGATGAGTACCTGGTTAGCTCGGACGTGGCTCGTATGCAAGAGTGTGCCGACTCGCTCGATTATATAATTGACACTGTCCCTGTGTTTCACCCACTTGAGCCTTACCTGTCTTTGTTGAAGCTAGATGGGAAGCTTATTTTGATGGGTGTTATTAATACTCCTCTGCAGTTTATCACACCCATGGTTATGCTTGGGAGGAAGACTATCACTGGGAGCTTCATTGGGAGCATCAAGGAAACAGAGGAAGTGCTTGAATTCTGCAAAGAAAAAGGATTGACTTCCACAATTGAAGTGGTGAAGATGGATTATATCAACACCGCTTTCGAAAGGTTGGAGAAGAACGATGTCAGATATAGGTTCGTTGTTGATGTCGCCGGCAGCAAACTTGACTAGCAAATACAAAGATGATATCACAAAAGTAACGCGAGACGCACAAATACTCTACTTCCTGAACAATCAGATATTGTGTCATGTTAGTTTATGGAGTTTAGAGT

Network for GWHGAAZE029748

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	35	150	3.90E-26
PF00107.27	ADH_zinc_N	192	314	8.90E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00083	CAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	141.456
	SRR3591706	second leaf	46.261
	SRR3591707	mature leaf	29.832
	SRR3591708	Shoot apex	30.011
	SRR3591709	Stem	479.595
	SRR3591710	White floral bud	56.693
	SRR3591711	White flower	50.513
	SRR3591712	Green floral bud	38.777
	SRR3591713	Yellow flower	35.748
SRP173429	SRR8316895	Juvenile bud stage	89.734
	SRR8316896	Juvenile bud stage	90.348
	SRR8316897	Juvenile bud stage	26.170
	SRR8316894	Third green stage	24.069
	SRR8316900	Third green stage	54.424
	SRR8316901	Third green stage	58.023
	SRR8316898	Complete white stage	55.984
	SRR8316899	Complete white stage	72.731
	SRR8316903	Complete white stage	69.518
	SRR8316902	Silver flowering stage	133.798
	SRR8316904	Silver flowering stage	216.553
	SRR8316905	Silver flowering stage	121.869
	SRR8316906	Gold flowering stage	145.222
	SRR8316907	Gold flowering stage	187.981
	SRR8316908	Gold flowering stage	216.011
SRP132670	SRR6706286	Control	40.134
	SRR6706287	Light intensity 50%	33.965
	SRR6706288	Light intensity 20%	30.534
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.373
	CNS0095593	Slightly white alabastrum(diploid) 2	29.044
	CNS0095594	Slightly white alabastrum(diploid) 3	37.428
	CNS0095595	Whole white alabastrum(diploid) 2	16.007
	CNS0095596	Whole white alabastrum(diploid) 3	14.036
	CNS0095597	Whole white alabastrum(diploid) 4	10.550
	CNS0095598	Silvery flower (diploied) 1	35.272
	CNS0095599	Silvery flower (diploied) 2	31.713
	CNS0095600	Silvery flower (diploied) 3	73.097
	CNS0095601	Golden flower (diploid) 1	18.937
	CNS0095602	Golden flower (diploid) 2	46.428
	CNS0095603	Golden flower (diploid) 3	43.990
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.309
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.632
	CNS0095610	Silvery flower (tetraploid) 1	51.918
	CNS0095611	Silvery flower (tetraploid) 2	38.295
	CNS0095612	Silvery flower (tetraploid) 3	55.580
	CNS0095613	Golden flower (tetraploid) 1	17.148
	CNS0095614	Golden flower (tetraploid) 2	36.562
	CNS0095615	Golden flower (tetraploid) 3	11.863
CRA001975	CRR073297	Stem 1	126.014
	CRR073298	Stem 2	89.060
	CRR073299	Stem 3	120.075
	CRR073300	Leaf 1	39.390
	CRR073301	Leaf 2	36.368
	CRR073302	Leaf 3	52.015
	CRR073303	Juvenile bud 1	33.860
	CRR073304	Juvenile bud 2	28.539
	CRR073305	Juvenile bud 3	52.825
	CRR073306	Third green 1	362.823
	CRR073307	Third green 2	501.419
	CRR073308	Third green 3	387.590
	CRR073309	Second white 1	73.454
	CRR073310	Second white 2	59.586
	CRR073311	Second white 3	45.148
	CRR073312	Silver flowering 1	57.919
	CRR073313	Silver flowering 2	59.918
	CRR073314	Silver flowering 3	55.456
	CRR073315	Gold flowering 1	8.990
	CRR073316	Gold flowering 2	6.671
	CRR073317	Gold flowering 3	15.193
	CRR073318	Tawny withering 1	144.767
	CRR073319	Tawny withering 2	113.730
	CRR073320	Tawny withering 3	149.704