Gene detail

Detail information of GWHGAAZE029752

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU42701.1	0	hypothetical protein MIMGU_mgv1a007100mg [Erythranthe guttata]
COG	YP_007513008.1	1E-120	putative S-methyl-5-thioribose kinase
Swissprot	tr\|Q9C6D2\|MTK_ARATH	0	Methylthioribose kinase
trEMBL	tr\|A0A022RRS2\|A0A022RRS2_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU42701.1}
TAIR10	AT1G49820.1	6E-171	S-methyl-5-thioribose kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32344681	32351239	+
GWHAAZE00000009	mRNA	32344681	32351239	+
GWHAAZE00000009	exon	32344681	32344990	+
GWHAAZE00000009	exon	32347131	32347440	+
GWHAAZE00000009	exon	32347782	32347956	+
GWHAAZE00000009	exon	32348058	32348259	+
GWHAAZE00000009	exon	32349449	32349663	+
GWHAAZE00000009	exon	32351071	32351239	+
GWHAAZE00000009	five_prime_UTR	32344681	32344927	+
GWHAAZE00000009	CDS	32344928	32344990	+
GWHAAZE00000009	CDS	32347131	32347440	+
GWHAAZE00000009	CDS	32347782	32347956	+
GWHAAZE00000009	CDS	32348058	32348259	+
GWHAAZE00000009	CDS	32349449	32349663	+
GWHAAZE00000009	CDS	32351071	32351239	+

Transcript Sequence
>GWHTAAZE029786 GTCCAACGTTCTTCATGCCTCGTCAAATACTCAATTAGGAGTCTTATTTAACTCATTAGATTCCTCCCCTCTCTCTATATGTTCGCCGCCACCGCCGAGAACAACCACCTCAGAGGAATGGAGTCAAAGGAATTCCGGCCACTGGACGAGAAGTCGTTAGTGGAATACATAAAAGCAACCCCGTCTCTATATTCGATTCTGGGAAATGAATTTCAATTCCAAGACTTGAAAATCAAAGAAGTGGGCGATGGCAATCTCAATTTCGTCTTTCATTATCGTTGGCCCCTCTGGTTCTTTTGTCATTAAGCAGGCTCTTCCTTACGTACGTAGTATTGGAGAATCATATCCAATGGCAAAGGAGCGCGCTTATTTTGAAGCAATTACCCTAAAAGAGCAGAGTCGTTTGTGCCCCGACCATGTTCCTGGGGTTTACCATTTCGATAGAACTATGTGTTTGATTGGCATGCAGTATTTGGCGCCTCCCCATATAGTCTTGAGGAAAGGTTTAATTGCTGGAATTGAGTACCCATTACTTGCAGACCACATCTCAGAATTTATGGCCAGGACATTGTTCTATTCGTCTCTACTTTATCATACCACCTTAGACCACAAAAGTGCAGTGGCTAAATATTGTGGGAACGTGGAGTTAGGCAGGCTAACTGAGCAGGTTGTCTTTTCTGACCCCTACAAAGTGTCTCAATATAACCATTGGACTTCTCCTTATCTTGATAGCGACGCTGAGGCAGTTCGGGAGGATAATATTTTGAAGCTCGAAGTCGCTGAGTTGAAATCCAAGTTCTGTGAAAGAGCACAAGCCCTTGTACACGGTGATCTCCATACTGGGTCAGTGATGGTTACACATGATTCAACTCAAGTTATAGATCCAGAATTTGCTTTCTATGGGCCGATGGGATTTGATGTTGGAGCCTTTCTTGGAAACTTGATTTTGTCTTACTATTCGCAAGATGGACATGCAAATGAGCAAAATGACCGAAAAACATATAAAGAGTGGATATTAAGGACAATAACAGATACTTGGAACCTGTTCTACAAAAAATTTACTGCTCTTTGGGATGAACACAAGGACGGTACCGGTGAGGCATATCTTCCTGCAATTTACAACAACCCGGAGCTTCAGCAGCTCGCGAAACAGAAATTCAAGACAGATTTGTTTCACGACACTCTTGGATTCGGTGCTGCCAAAATGATAAGGAGAATTGTTGGGGTAGCTCATGTTGAGGATTTTGAGTCAATTGCCGATGCTGCCAAACGAGCGGATTGTGAGCGGCGAGCTCTTAACCTTGCCAAGATCCTTCTCAAGGAAAGGCGGAAATTCAATTCCATTTCCGAAGTTGTTTCCGCCATTCAACAACTCCGTTGA

Network for GWHGAAZE029752

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01636.24	APH	91	229	6.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00899	mtnK	Metabolic pathways	map01100
K00899	mtnK	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009086	biological_process	methionine biosynthetic process
GO:0046522	molecular_function	S-methyl-5-thioribose kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.185
	SRR3591706	second leaf	0.097
	SRR3591707	mature leaf	0.214
	SRR3591708	Shoot apex	0.263
	SRR3591709	Stem	3.665
	SRR3591710	White floral bud	0.333
	SRR3591711	White flower	0.358
	SRR3591712	Green floral bud	4.743
	SRR3591713	Yellow flower	0.202
SRP173429	SRR8316895	Juvenile bud stage	0.064
	SRR8316896	Juvenile bud stage	0.153
	SRR8316897	Juvenile bud stage	0.368
	SRR8316894	Third green stage	0.098
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	0.025
	SRR8316899	Complete white stage	0.587
	SRR8316903	Complete white stage	0.039
	SRR8316902	Silver flowering stage	0.106
	SRR8316904	Silver flowering stage	0.055
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.028
	SRR8316907	Gold flowering stage	0.217
	SRR8316908	Gold flowering stage	0.052
SRP132670	SRR6706286	Control	0.037
	SRR6706287	Light intensity 50%	0.118
	SRR6706288	Light intensity 20%	0.059
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.220
	CNS0095593	Slightly white alabastrum(diploid) 2	0.407
	CNS0095594	Slightly white alabastrum(diploid) 3	0.385
	CNS0095595	Whole white alabastrum(diploid) 2	0.372
	CNS0095596	Whole white alabastrum(diploid) 3	0.126
	CNS0095597	Whole white alabastrum(diploid) 4	0.557
	CNS0095598	Silvery flower (diploied) 1	0.248
	CNS0095599	Silvery flower (diploied) 2	0.387
	CNS0095600	Silvery flower (diploied) 3	0.208
	CNS0095601	Golden flower (diploid) 1	0.160
	CNS0095602	Golden flower (diploid) 2	0.321
	CNS0095603	Golden flower (diploid) 3	0.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.616
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.975
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.487
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.224
	CNS0095610	Silvery flower (tetraploid) 1	0.941
	CNS0095611	Silvery flower (tetraploid) 2	0.366
	CNS0095612	Silvery flower (tetraploid) 3	0.558
	CNS0095613	Golden flower (tetraploid) 1	0.627
	CNS0095614	Golden flower (tetraploid) 2	0.888
	CNS0095615	Golden flower (tetraploid) 3	0.037
CRA001975	CRR073297	Stem 1	0.046
	CRR073298	Stem 2	0.019
	CRR073299	Stem 3	0.126
	CRR073300	Leaf 1	0.030
	CRR073301	Leaf 2	0.356
	CRR073302	Leaf 3	0.151
	CRR073303	Juvenile bud 1	0.399
	CRR073304	Juvenile bud 2	0.058
	CRR073305	Juvenile bud 3	0.174
	CRR073306	Third green 1	0.095
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.005
	CRR073309	Second white 1	0.023
	CRR073310	Second white 2	0.011
	CRR073311	Second white 3	0.054
	CRR073312	Silver flowering 1	0.091
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.027
	CRR073315	Gold flowering 1	0.038
	CRR073316	Gold flowering 2	0.048
	CRR073317	Gold flowering 3	0.235
	CRR073318	Tawny withering 1	1.631
	CRR073319	Tawny withering 2	2.212
	CRR073320	Tawny withering 3	1.245