Gene detail

Detail information of GWHGAAZE029753

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU42701.1	0	hypothetical protein MIMGU_mgv1a007100mg [Erythranthe guttata]
COG	YP_007513008.1	1E-135	putative S-methyl-5-thioribose kinase
Swissprot	tr\|Q9C6D2\|MTK_ARATH	0	Methylthioribose kinase
trEMBL	tr\|A0A022RRS2\|A0A022RRS2_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU42701.1}
TAIR10	AT1G49820.1	0	S-methyl-5-thioribose kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32361551	32366493	+
GWHAAZE00000009	mRNA	32361551	32366493	+
GWHAAZE00000009	exon	32361551	32361865	+
GWHAAZE00000009	exon	32362930	32363239	+
GWHAAZE00000009	exon	32363548	32363722	+
GWHAAZE00000009	exon	32363831	32364032	+
GWHAAZE00000009	exon	32365127	32365341	+
GWHAAZE00000009	exon	32366269	32366493	+
GWHAAZE00000009	five_prime_UTR	32361551	32361673	+
GWHAAZE00000009	CDS	32361674	32361865	+
GWHAAZE00000009	CDS	32362930	32363239	+
GWHAAZE00000009	CDS	32363548	32363722	+
GWHAAZE00000009	CDS	32363831	32364032	+
GWHAAZE00000009	CDS	32365127	32365341	+
GWHAAZE00000009	CDS	32366269	32366437	+
GWHAAZE00000009	three_prime_UTR	32366438	32366493	+

Transcript Sequence
>GWHTAAZE029787 GTTCATGCCTCTTTTCTCCTCGTCAAATACTCATTACTCTACTAGGAGTCTTATTTAACTCATCAGATTCCTCCCCTCTCTCAATATATCGCCACCAACGCCGAGAACAACCACCTCTGAGGAATGGGGTCAAAGGAATTCCGGCCACTGGACGAGAAGTCTTTAGTGGAATACATAAAAGCAACCCCATCTCTATCTTCGATTCTGGGAAATGAATTCCAATTCCAAGATTTGCAAATCAAAGAAGTGGGCGATGGCAATCTTAATTTCGTCTTCATTATTGTTGGCCCCTCTGGTTCTTTTGTCATCAAACAGGCTCTTCCTTACATACGTTGTATTGGAGAATCATGGCCGATGGCAAAGGAGCGCGCTTATTTTGAAGCAATTACCCTAAAAGAGCAGGGTCGTTTGTGCCCCGACCATGTTCCTGAAGTTTATCATTTCGATAGAACTATGTGTTTGATTGGCATGCGGTACTTGGCACCACCCCATATAATCTTGAGGAAAGGTTTAATTGCTGGAATTGAGTACCCATTGCTTGCGGACCACATATCAGAATTTATGGCGAGGACTTTGTTCTATTCGTCTCTACTCTATCTTACCACCACAGACCACAAAAGTGCAGTGGCTAAATATTGTGGGAACGTGGAGTTATGCAGGCTAACTGAGCAGGTTGTCTTTTCTGACCCCTACAAAGTGTCTCAGTATAACCATTGGACTTCTCCTTATCTTGATAGCGATGCCGAGGCAGTTCGGGAGGATAATATTTTGAAGCTTGAAGTCGCAGAGTTGAAATCCAAGTTCTGTGAAAGAGCCCAAGCCCTTGTACACGGTGATCTCCATACCGGGTCAGTGATGGTTACACATGATTCAACTCAAGTTATAGATCCAGAATTTGCTTTCTATGGGCCTATGGGATTTGATATTGGAGCCTATCTTGGAAACTTGATTTTGTCTTACTATTCGCAAGATGGACATGCAAATGAGCAAAATGACCGAAAAACATATAAAGAGTGGATATTAAGGTCAATAACCGATACTTGGAACCTCTTCTACAAAAAATTTACTGTTCTTTGGGATGAACACAAGGACGGTTCTGGTGAGGCCTATCTTCCTGCAATTTACAACAACCCGGAGCTTCAGCTGCTCGTAAAACAGAAATTCATGACAGATTTGCTCCAAGACACTCTTGGATTCGGTGCTGCCAAAATGATAAGGAGAATTGTTGGGGTAGCTCATGTTGAGGATTTTGAGTCAATTGCCGATGCTGCCAAACGAGCAGATTGTGAGCGGCGAGCTCTTAACCTTGCCAAGATTCTTCTCAAGGAAAGGCGGAAATTCAATTCCATTTCCGAAGTTGTTTCCACCATTCAACAACTCCATTGACAATACCTTCTTCGTAAGTTTGATAATGTGACAATCTTGCTGATACAATCTACTTC

Network for GWHGAAZE029753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01636.24	APH	39	272	6.00E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00899	mtnK	Metabolic pathways	map01100
K00899	mtnK	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009086	biological_process	methionine biosynthetic process
GO:0046522	molecular_function	S-methyl-5-thioribose kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	212.982
	SRR3591706	second leaf	54.820
	SRR3591707	mature leaf	48.590
	SRR3591708	Shoot apex	72.873
	SRR3591709	Stem	259.415
	SRR3591710	White floral bud	55.938
	SRR3591711	White flower	70.800
	SRR3591712	Green floral bud	52.535
	SRR3591713	Yellow flower	41.214
SRP173429	SRR8316895	Juvenile bud stage	40.943
	SRR8316896	Juvenile bud stage	49.525
	SRR8316897	Juvenile bud stage	22.395
	SRR8316894	Third green stage	21.550
	SRR8316900	Third green stage	62.752
	SRR8316901	Third green stage	54.960
	SRR8316898	Complete white stage	22.658
	SRR8316899	Complete white stage	110.791
	SRR8316903	Complete white stage	40.687
	SRR8316902	Silver flowering stage	20.740
	SRR8316904	Silver flowering stage	28.624
	SRR8316905	Silver flowering stage	13.995
	SRR8316906	Gold flowering stage	50.654
	SRR8316907	Gold flowering stage	47.192
	SRR8316908	Gold flowering stage	45.377
SRP132670	SRR6706286	Control	59.417
	SRR6706287	Light intensity 50%	54.692
	SRR6706288	Light intensity 20%	59.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.630
	CNS0095593	Slightly white alabastrum(diploid) 2	51.255
	CNS0095594	Slightly white alabastrum(diploid) 3	42.252
	CNS0095595	Whole white alabastrum(diploid) 2	51.810
	CNS0095596	Whole white alabastrum(diploid) 3	39.124
	CNS0095597	Whole white alabastrum(diploid) 4	52.164
	CNS0095598	Silvery flower (diploied) 1	77.179
	CNS0095599	Silvery flower (diploied) 2	84.500
	CNS0095600	Silvery flower (diploied) 3	93.786
	CNS0095601	Golden flower (diploid) 1	71.657
	CNS0095602	Golden flower (diploid) 2	82.743
	CNS0095603	Golden flower (diploid) 3	83.983
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.062
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.841
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.535
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.213
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.398
	CNS0095610	Silvery flower (tetraploid) 1	79.284
	CNS0095611	Silvery flower (tetraploid) 2	84.708
	CNS0095612	Silvery flower (tetraploid) 3	79.266
	CNS0095613	Golden flower (tetraploid) 1	44.710
	CNS0095614	Golden flower (tetraploid) 2	71.154
	CNS0095615	Golden flower (tetraploid) 3	40.379
CRA001975	CRR073297	Stem 1	54.462
	CRR073298	Stem 2	46.684
	CRR073299	Stem 3	47.939
	CRR073300	Leaf 1	56.854
	CRR073301	Leaf 2	59.409
	CRR073302	Leaf 3	52.569
	CRR073303	Juvenile bud 1	85.025
	CRR073304	Juvenile bud 2	45.677
	CRR073305	Juvenile bud 3	90.682
	CRR073306	Third green 1	20.991
	CRR073307	Third green 2	24.515
	CRR073308	Third green 3	24.383
	CRR073309	Second white 1	33.240
	CRR073310	Second white 2	19.859
	CRR073311	Second white 3	21.620
	CRR073312	Silver flowering 1	18.607
	CRR073313	Silver flowering 2	15.106
	CRR073314	Silver flowering 3	18.416
	CRR073315	Gold flowering 1	50.262
	CRR073316	Gold flowering 2	73.417
	CRR073317	Gold flowering 3	54.046
	CRR073318	Tawny withering 1	185.197
	CRR073319	Tawny withering 2	223.317
	CRR073320	Tawny withering 3	152.983