Gene detail

Detail information of GWHGAAZE029762

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647950.1	4.47507E-96	PREDICTED: homeobox protein HAT3.1 isoform X3 [Vitis vinifera]
Swissprot	tr\|P48786\|PRH_PETCR	2E-61	Pathogenesis-related homeodomain protein
trEMBL	tr\|F6H698\|F6H698_VITVI	2E-95	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47727.1}
TAIR10	AT3G19510.1	2E-32	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32547586	32549993	-
GWHAAZE00000009	mRNA	32547586	32549993	-
GWHAAZE00000009	exon	32547586	32547996	-
GWHAAZE00000009	exon	32548806	32549336	-
GWHAAZE00000009	exon	32549599	32549711	-
GWHAAZE00000009	exon	32549820	32549916	-
GWHAAZE00000009	exon	32549991	32549993	-
GWHAAZE00000009	CDS	32549991	32549993	-
GWHAAZE00000009	CDS	32549820	32549916	-
GWHAAZE00000009	CDS	32549599	32549711	-
GWHAAZE00000009	CDS	32548806	32549336	-
GWHAAZE00000009	CDS	32547586	32547996	-

Transcript Sequence
>GWHTAAZE029796 ATGGAGTTGCCAGCAAATAATGATATAATCCTTTGTGATGGTGCTTGTGAACGTGGATTCCATCAGTTATGTTTGGATCCACCATTGTTGAATGAAGACATTCCTCCTGATGATGAAGGTTGGCTTTGCCCTGGATGTGATTGCAAGGTTGACTGCACCGATTTGCTTAATGATTCACAAGGAACAAATCTTTCTATCACTGACAGCTGGGAGGAAGTTTTCCCCGAGGCTGCAGCAGCAGCATCTGGAAATAATTTGGCTGATTTATCTGGATTGCCCTCAGATGATTCTGAGGATGATGATTATGATCCTGAGGGTCCACAGTTAGACAAAGAGATGCAGGGCGAGGAATCAAGTTCGGATGAATCTGATTTCTCTTCTGCATCTGATGATTTGGGGACTTTGCCGATTAATGACCCTTATGCCGGTCTTCCCTCAGACGATTCAGAGGATGATGATTACAACCCTAATTCACAAAATCTTGATGAAAAGGTTCAGCAAGAAAGTTCAAGTTCAGATTTTACATCGGACTCTGAGTATTTTAGTGCTGGATCTGATGATAACAGACCTGATGATGAAGTTCAAGGGCCTAATGGAGAAAGATTGGAACTGGGAAGAAAGAAGAGGCAAAATTTAAGTGATGAGCTGGCATCCCTTTTGGATTCGGGTCTGGAGGGAGGTGATTCCGCCCCTCGATCTGAAAAAAGACATGTAGAAAGGTTGGACTACAAAAGGCTACATAATGAGACATATGGCAATGTATCTTCTGATTCAAGCGATGAAGATTATATGGACACTACTAATGCACCGAAGAGGAGAAAGACTAACAATGGCAAAGTAGCTTATGTTTTGCACAATAGAAAGACTCAAAATAATGATTTGAAGGATATTAAGCACAATGAGAAAGAGAGCGATGGCAAAGTAGCTTCTGTTTTGCACAATAGGAAGACTCAAAATAATGATTTGAAGGATATTAAGCACAATGAGAGAGAGAGTGAACAAACTCCTAAGAGAAGAACCAGAAGTAAGAAGCAAGATAATGAAGCCACCAGTGATTCACCTGCTAAATCGCATCAAGGTTCTTCTGGACCAGATTCTTGTGGTAAAAGTACAACTAGGTCAGCAAATAGAAGACTTGGAGAAGCTGTAACTCAG

Network for GWHGAAZE029762

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	5	49	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.546
	SRR3591706	second leaf	17.803
	SRR3591707	mature leaf	14.783
	SRR3591708	Shoot apex	18.862
	SRR3591709	Stem	10.684
	SRR3591710	White floral bud	17.091
	SRR3591711	White flower	15.713
	SRR3591712	Green floral bud	12.656
	SRR3591713	Yellow flower	9.492
SRP173429	SRR8316895	Juvenile bud stage	9.985
	SRR8316896	Juvenile bud stage	11.803
	SRR8316897	Juvenile bud stage	6.508
	SRR8316894	Third green stage	5.445
	SRR8316900	Third green stage	12.359
	SRR8316901	Third green stage	10.680
	SRR8316898	Complete white stage	2.129
	SRR8316899	Complete white stage	11.860
	SRR8316903	Complete white stage	6.614
	SRR8316902	Silver flowering stage	3.749
	SRR8316904	Silver flowering stage	5.851
	SRR8316905	Silver flowering stage	2.047
	SRR8316906	Gold flowering stage	5.723
	SRR8316907	Gold flowering stage	6.281
	SRR8316908	Gold flowering stage	6.653
SRP132670	SRR6706286	Control	9.529
	SRR6706287	Light intensity 50%	10.320
	SRR6706288	Light intensity 20%	10.273
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.970
	CNS0095593	Slightly white alabastrum(diploid) 2	7.950
	CNS0095594	Slightly white alabastrum(diploid) 3	6.830
	CNS0095595	Whole white alabastrum(diploid) 2	6.709
	CNS0095596	Whole white alabastrum(diploid) 3	8.314
	CNS0095597	Whole white alabastrum(diploid) 4	8.929
	CNS0095598	Silvery flower (diploied) 1	14.210
	CNS0095599	Silvery flower (diploied) 2	11.302
	CNS0095600	Silvery flower (diploied) 3	8.246
	CNS0095601	Golden flower (diploid) 1	10.755
	CNS0095602	Golden flower (diploid) 2	10.726
	CNS0095603	Golden flower (diploid) 3	8.938
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.176
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.582
	CNS0095610	Silvery flower (tetraploid) 1	10.198
	CNS0095611	Silvery flower (tetraploid) 2	9.446
	CNS0095612	Silvery flower (tetraploid) 3	8.621
	CNS0095613	Golden flower (tetraploid) 1	6.282
	CNS0095614	Golden flower (tetraploid) 2	7.601
	CNS0095615	Golden flower (tetraploid) 3	4.567
CRA001975	CRR073297	Stem 1	11.778
	CRR073298	Stem 2	8.069
	CRR073299	Stem 3	5.330
	CRR073300	Leaf 1	7.491
	CRR073301	Leaf 2	7.322
	CRR073302	Leaf 3	4.622
	CRR073303	Juvenile bud 1	4.579
	CRR073304	Juvenile bud 2	3.347
	CRR073305	Juvenile bud 3	3.278
	CRR073306	Third green 1	2.717
	CRR073307	Third green 2	2.389
	CRR073308	Third green 3	1.160
	CRR073309	Second white 1	0.902
	CRR073310	Second white 2	1.718
	CRR073311	Second white 3	1.450
	CRR073312	Silver flowering 1	1.505
	CRR073313	Silver flowering 2	0.865
	CRR073314	Silver flowering 3	1.317
	CRR073315	Gold flowering 1	4.469
	CRR073316	Gold flowering 2	4.726
	CRR073317	Gold flowering 3	0.645
	CRR073318	Tawny withering 1	5.179
	CRR073319	Tawny withering 2	9.016
	CRR073320	Tawny withering 3	6.920