Detail information of GWHGAAZE029774


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006346321.13.56852E-96PREDICTED: LOB domain-containing protein 37-like [Solanum tuberosum]
Swissprottr|Q9FN11|LBD37_ARATH6E-68LOB domain-containing protein 37
trEMBLtr|M1CF43|M1CF43_SOLTU1E-96Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066165}
TAIR10AT3G49940.16E-54LOB domain-containing protein 38

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3268253932683501-
GWHAAZE00000009mRNA3268253932683501-
GWHAAZE00000009exon3268253932683029-
GWHAAZE00000009exon3268331832683501-
GWHAAZE00000009CDS3268331832683501-
GWHAAZE00000009CDS3268253932683029-
Transcript Sequence

Network for GWHGAAZE029774

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB21007.80E-25
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.983
SRR3591706second leaf0.736
SRR3591707mature leaf0.894
SRR3591708Shoot apex3.913
SRR3591709Stem27.055
SRR3591710White floral bud8.259
SRR3591711White flower16.836
SRR3591712Green floral bud7.957
SRR3591713Yellow flower3.261
SRP173429 SRR8316895Juvenile bud stage 4.815
SRR8316896Juvenile bud stage 4.422
SRR8316897Juvenile bud stage 1.437
SRR8316894Third green stage 2.294
SRR8316900Third green stage 5.283
SRR8316901Third green stage 4.387
SRR8316898Complete white stage 0.944
SRR8316899Complete white stage 4.861
SRR8316903Complete white stage 2.769
SRR8316902Silver flowering stage0.846
SRR8316904Silver flowering stage0.892
SRR8316905Silver flowering stage0.366
SRR8316906Gold flowering stage 0.674
SRR8316907Gold flowering stage 1.205
SRR8316908Gold flowering stage 1.176
SRP132670SRR6706286Control6.258
SRR6706287Light intensity 50%8.050
SRR6706288Light intensity 20%5.910
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.654
CNS0095593Slightly white alabastrum(diploid) 23.082
CNS0095594Slightly white alabastrum(diploid) 32.889
CNS0095595Whole white alabastrum(diploid) 23.037
CNS0095596Whole white alabastrum(diploid) 33.260
CNS0095597Whole white alabastrum(diploid) 43.476
CNS0095598Silvery flower (diploied) 18.371
CNS0095599Silvery flower (diploied) 21.926
CNS0095600Silvery flower (diploied) 33.345
CNS0095601Golden flower (diploid) 16.212
CNS0095602Golden flower (diploid) 210.737
CNS0095603Golden flower (diploid) 311.479
CNS0095604Slightly white alabastrum(tetraploid) 13.459
CNS0095605Slightly white alabastrum(tetraploid) 23.384
CNS0095606Slightly white alabastrum(tetraploid) 37.732
CNS0095607Whole white alabastrum(tetraploid) 14.201
CNS0095608Whole white alabastrum(tetraploid) 21.632
CNS0095609Whole white alabastrum(tetraploid) 33.961
CNS0095610Silvery flower (tetraploid) 11.249
CNS0095611Silvery flower (tetraploid) 23.696
CNS0095612Silvery flower (tetraploid) 31.078
CNS0095613Golden flower (tetraploid) 10.061
CNS0095614Golden flower (tetraploid) 20.304
CNS0095615Golden flower (tetraploid) 30.085
CRA001975CRR073297Stem 17.329
CRR073298Stem 26.868
CRR073299Stem 315.297
CRR073300Leaf 12.697
CRR073301Leaf 25.075
CRR073302Leaf 34.676
CRR073303Juvenile bud 12.579
CRR073304Juvenile bud 21.836
CRR073305Juvenile bud 36.599
CRR073306Third green 139.130
CRR073307Third green 217.216
CRR073308Third green 314.278
CRR073309Second white 141.343
CRR073310Second white 29.676
CRR073311Second white 33.997
CRR073312Silver flowering 12.128
CRR073313Silver flowering 21.666
CRR073314Silver flowering 31.684
CRR073315Gold flowering 10.072
CRR073316Gold flowering 21.036
CRR073317Gold flowering 30.063
CRR073318Tawny withering 14.030
CRR073319Tawny withering 25.377
CRR073320Tawny withering 34.107