Detail information of GWHGAAZE029781


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011092491.11.9607E-110PREDICTED: LIM domain-containing protein WLIM1-like [Sesamum indicum]
Swissprottr|Q94JX5|WLIM1_ARATH5E-101LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|D7SXP0|D7SXP0_VITVI5E-110Putative uncharacterized protein {ECO:0000313|EMBL:CBI22440.3}
TAIR10AT1G10200.12E-72GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3281290932814572+
GWHAAZE00000009mRNA3281290932814572+
GWHAAZE00000009exon3281290932813043+
GWHAAZE00000009exon3281338832813484+
GWHAAZE00000009exon3281362732813670+
GWHAAZE00000009exon3281395832814041+
GWHAAZE00000009exon3281436332814572+
GWHAAZE00000009CDS3281290932813043+
GWHAAZE00000009CDS3281338832813484+
GWHAAZE00000009CDS3281362732813670+
GWHAAZE00000009CDS3281395832814041+
GWHAAZE00000009CDS3281436332814572+
Transcript Sequence

Network for GWHGAAZE029781

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM10648.20E-11
PF00412.23LIM1081639.90E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.936
SRR3591706second leaf0.268
SRR3591707mature leaf0.523
SRR3591708Shoot apex0.981
SRR3591709Stem3.439
SRR3591710White floral bud476.035
SRR3591711White flower22.629
SRR3591712Green floral bud486.570
SRR3591713Yellow flower14.022
SRP173429 SRR8316895Juvenile bud stage 4.848
SRR8316896Juvenile bud stage 71.125
SRR8316897Juvenile bud stage 45.589
SRR8316894Third green stage 47.732
SRR8316900Third green stage 300.171
SRR8316901Third green stage 321.893
SRR8316898Complete white stage 0.429
SRR8316899Complete white stage 2.040
SRR8316903Complete white stage 1.009
SRR8316902Silver flowering stage4.131
SRR8316904Silver flowering stage11.412
SRR8316905Silver flowering stage3.731
SRR8316906Gold flowering stage 1.948
SRR8316907Gold flowering stage 0.548
SRR8316908Gold flowering stage 0.442
SRP132670SRR6706286Control207.954
SRR6706287Light intensity 50%207.408
SRR6706288Light intensity 20%187.856
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1362.013
CNS0095593Slightly white alabastrum(diploid) 2267.030
CNS0095594Slightly white alabastrum(diploid) 3404.030
CNS0095595Whole white alabastrum(diploid) 2764.139
CNS0095596Whole white alabastrum(diploid) 3899.286
CNS0095597Whole white alabastrum(diploid) 41097.358
CNS0095598Silvery flower (diploied) 129.897
CNS0095599Silvery flower (diploied) 287.010
CNS0095600Silvery flower (diploied) 318.975
CNS0095601Golden flower (diploid) 128.140
CNS0095602Golden flower (diploid) 218.713
CNS0095603Golden flower (diploid) 317.702
CNS0095604Slightly white alabastrum(tetraploid) 1437.567
CNS0095605Slightly white alabastrum(tetraploid) 2521.386
CNS0095606Slightly white alabastrum(tetraploid) 30.390
CNS0095607Whole white alabastrum(tetraploid) 1908.901
CNS0095608Whole white alabastrum(tetraploid) 21127.522
CNS0095609Whole white alabastrum(tetraploid) 3441.245
CNS0095610Silvery flower (tetraploid) 110.773
CNS0095611Silvery flower (tetraploid) 244.944
CNS0095612Silvery flower (tetraploid) 399.486
CNS0095613Golden flower (tetraploid) 120.724
CNS0095614Golden flower (tetraploid) 26.275
CNS0095615Golden flower (tetraploid) 358.946
CRA001975CRR073297Stem 137.671
CRR073298Stem 250.681
CRR073299Stem 315.994
CRR073300Leaf 1248.354
CRR073301Leaf 2159.913
CRR073302Leaf 391.380
CRR073303Juvenile bud 1176.209
CRR073304Juvenile bud 2155.071
CRR073305Juvenile bud 313.152
CRR073306Third green 173.718
CRR073307Third green 2130.527
CRR073308Third green 391.951
CRR073309Second white 13.259
CRR073310Second white 220.714
CRR073311Second white 316.525
CRR073312Silver flowering 164.391
CRR073313Silver flowering 252.618
CRR073314Silver flowering 332.875
CRR073315Gold flowering 1148.154
CRR073316Gold flowering 238.179
CRR073317Gold flowering 336.302
CRR073318Tawny withering 186.911
CRR073319Tawny withering 295.395
CRR073320Tawny withering 370.480