Gene detail

Detail information of GWHGAAZE029787

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003520448.1	3.90061E-43	PREDICTED: uncharacterized protein LOC100809118 [Glycine max]
Swissprot	tr\|Q9C870\|MCC01_ARATH	2E-15	MATH domain and coiled-coil domain-containing protein At1g31390
trEMBL	tr\|I1JMU8\|I1JMU8_SOYBN	1E-43	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G26990.1}
TAIR10	AT3G17380.1	2E-27	TRAF-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32966298	32968750	-
GWHAAZE00000009	mRNA	32966298	32968750	-
GWHAAZE00000009	exon	32968616	32968750	-
GWHAAZE00000009	exon	32967732	32967976	-
GWHAAZE00000009	exon	32967460	32967626	-
GWHAAZE00000009	exon	32966637	32966790	-
GWHAAZE00000009	exon	32966298	32966382	-
GWHAAZE00000009	CDS	32968616	32968750	-
GWHAAZE00000009	CDS	32967732	32967976	-
GWHAAZE00000009	CDS	32967460	32967626	-
GWHAAZE00000009	CDS	32966637	32966790	-
GWHAAZE00000009	CDS	32966298	32966382	-

Transcript Sequence
>GWHTAAZE029821 ATGATTGTAATTGATTTACTTGCATTGTTGAATTTCAGGAGACTTTTTTTGTATCCTATAGGAAATACAAAGAGAAATGTGGGCAATCACATCTCACTATACCTGGCCATAAGTGATACAAGAAGTTTTCATAAGACTGAATGGGGATTTGACAAATTACTTCCTCTAGAATTGTTCTACGATACTTCAAGCGGGTACATCTATGAAGACTCTTGCGTATTTGGAGCTGAGGTTTTTGTTAATAAATATGAAGGCACAATACACTGTTTGGACATGAAAAAGGAAACCAAATATCTAACCTACACTTGGAAAATAGATTGTTTTTCAGCAGTAAAAGAAGTGCTAAAATCGGACAATATTGAAGTTGGAGACCTTAAGTGGAACCTAGTCCTGCACCCCAAGGGAAAGGGAGAACATGAAGGCAAATTTCTACAGCTTGGTCTTGAAGTAGCTGATGATGGAACCCTTCCTCGCAAATGGAAAGTTGACGTGAAATACAAGCTTCAAATAAATGATCAACTTACGCATAAACATGAAGAAATTGAAGATGATGAATGGTTATGTGACTCGAGTAAGCAAGTGATTTATCGGAAATTCATGTTGTGCAGTGATCTCATGGAAGAAAAAAGGGGATTCCTAGTGAATGATACTTTAATTGTTGAAGCAGGAATTAAAGTTATTGCTATGATGAAGAACCTCACTGTGGTTGAGATCAAGCCCCATATGAACGGCAAATGTCTACCACTAGCATTTCCAGCCACATTGGATATGCCTCTGAAGCTCTAG

Network for GWHGAAZE029787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0159

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.27	MATH	37	80	0.048
PF00917.27	MATH	105	226	3.40E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.705
	SRR3591706	second leaf	0.339
	SRR3591707	mature leaf	0.435
	SRR3591708	Shoot apex	2.975
	SRR3591709	Stem	4.293
	SRR3591710	White floral bud	3.804
	SRR3591711	White flower	5.129
	SRR3591712	Green floral bud	1.865
	SRR3591713	Yellow flower	0.718
SRP173429	SRR8316895	Juvenile bud stage	1.360
	SRR8316896	Juvenile bud stage	1.663
	SRR8316897	Juvenile bud stage	0.282
	SRR8316894	Third green stage	1.015
	SRR8316900	Third green stage	2.219
	SRR8316901	Third green stage	1.204
	SRR8316898	Complete white stage	1.568
	SRR8316899	Complete white stage	8.100
	SRR8316903	Complete white stage	3.814
	SRR8316902	Silver flowering stage	0.167
	SRR8316904	Silver flowering stage	0.522
	SRR8316905	Silver flowering stage	0.149
	SRR8316906	Gold flowering stage	0.198
	SRR8316907	Gold flowering stage	0.131
	SRR8316908	Gold flowering stage	0.181
SRP132670	SRR6706286	Control	0.550
	SRR6706287	Light intensity 50%	0.594
	SRR6706288	Light intensity 20%	0.665
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.115
	CNS0095593	Slightly white alabastrum(diploid) 2	4.761
	CNS0095594	Slightly white alabastrum(diploid) 3	2.731
	CNS0095595	Whole white alabastrum(diploid) 2	4.495
	CNS0095596	Whole white alabastrum(diploid) 3	0.439
	CNS0095597	Whole white alabastrum(diploid) 4	2.739
	CNS0095598	Silvery flower (diploied) 1	16.465
	CNS0095599	Silvery flower (diploied) 2	7.265
	CNS0095600	Silvery flower (diploied) 3	2.693
	CNS0095601	Golden flower (diploid) 1	7.350
	CNS0095602	Golden flower (diploid) 2	7.873
	CNS0095603	Golden flower (diploid) 3	4.800
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.546
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.571
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.222
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.284
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.801
	CNS0095610	Silvery flower (tetraploid) 1	0.529
	CNS0095611	Silvery flower (tetraploid) 2	3.127
	CNS0095612	Silvery flower (tetraploid) 3	0.874
	CNS0095613	Golden flower (tetraploid) 1	0.624
	CNS0095614	Golden flower (tetraploid) 2	1.375
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.244
	CRR073298	Stem 2	0.340
	CRR073299	Stem 3	0.838
	CRR073300	Leaf 1	0.217
	CRR073301	Leaf 2	1.428
	CRR073302	Leaf 3	0.044
	CRR073303	Juvenile bud 1	0.028
	CRR073304	Juvenile bud 2	0.584
	CRR073305	Juvenile bud 3	0.068
	CRR073306	Third green 1	0.027
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.128
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.553
	CRR073316	Gold flowering 2	0.583
	CRR073317	Gold flowering 3	0.183
	CRR073318	Tawny withering 1	1.584
	CRR073319	Tawny withering 2	1.473
	CRR073320	Tawny withering 3	0.812