Gene detail

Detail information of GWHGAAZE029842

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEI83423.1	0	glutamyl-tRNA reductase [Camellia sinensis]
COG	YP_007128890.1	5E-125	glutamyl-tRNA reductase
Swissprot	tr\|P93111\|HEM11_CUCSA	0	Glutamyl-tRNA reductase 1, chloroplastic (Precursor)
trEMBL	tr\|F8SPG6\|F8SPG6_CAMSI	0	Glutamyl-tRNA reductase {ECO:0000256\|RuleBase:RU000584}
TAIR10	AT1G58290.1	0	Glutamyl-tRNA reductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34148408	34150242	+
GWHAAZE00000009	mRNA	34148408	34150242	+
GWHAAZE00000009	exon	34148408	34148647	+
GWHAAZE00000009	exon	34149112	34150242	+
GWHAAZE00000009	CDS	34148408	34148647	+
GWHAAZE00000009	CDS	34149112	34150242	+

Transcript Sequence
>GWHTAAZE029876 TATACGAAGGAAATGAGTAGTATCATGGTTATTGGGCTCAATATCCATACAGCACCGGTTGATATACGTGAGAAACTTTCCATTCCAGAAGCACAATGGCCTCAAGCAATTGGCGAGTTATGTGCTCTGAATCATATTGAAGAAGCTGCTGTTCTTAGCACTTGTAACAGAATGGAGATATATGTTGTGGCTCTCTCTCAGCATCGTGGGGTTAAAGAAGTGACTGAGTGGATGTCAAAGATCAGCGGGGTCTCTATCTCAGAGATTTCTCAACACCGGTTTTTGCTATACAACAAAGATGCTACACGGCACTTATTTGAAGTATCTGCTGGACTTGATTCTCTTGTCCTAGGCGAAGGTCAAATTCTTGCTCAGGTAAAACAAGTTGTGAAAACCGGACAGGGTCTCCCCGGCTTTGATAGGAAAATCAGCGGGCTGTTCAAGCATGCAATAACAGTTGGCAAGCGTGTTAGAACGGAGACAAATATTTCCTCGGGGTCTGTTTCAGTCAGTTCAGCTGCTGTAGAACTTGCCCAAACAAAGATCCCAGATTCTTCTTATGCTGATGCCCGAGTATTGGTAGTTGGGGCAGGGAAAATGGGGAAACTTGTAATCAAACATTTAGCCGCGAAAGGGTGCACCAAAATGGTGGTTGTCAATAGAACCGAGGATAGAGTCGCAGCTATCTGTGAGGAACTTAAGGATATTGAAATCATTTACCAACCCCTTACTGAACTCTTACTCTGCGCCTCCCAAGCCGATGTGGTTTTCACCAGCACTGCTAATGAAACCCCATTGTTTTTGAAAGAGGATGTTCAGTCACTCCCTGCTGCGAGCTCCCGGTTTGGAGGAACTAGGTTGTTTATTGACATCTCTGTCCCTAGAAACGTGGGCCCGTGCGTGTCGGAACTTGAAAACACGCGTGTTTTTAACGTGGACGATCTTAAAGAAATTGTGGCCACTAACAAAGAGGATCGGTTACGTAAAGCAATGGAAGCTCAAGCGATTATTGCAGATGAGGTCACACAGTTTGAGGCTTGGAAGGACTCGCTGGAGACTGTTCCAACCATAAAGAAACTTAGGGCTTATGCCGATAGAATTAGGGCTGCTGAGATGGATAAGTGTTTGTCTAAAATGGGTGAGGGTATCTCAAAGAAGCAAAAGCAAGCCATTTATGATCTTAGCATGGGGATAGTGAACAAGATCCTTCATGGTCCAATGCAGCATTTGAGATGCGATGGGACTGATGATCGGACCCTGAGCGAGATACTTGAAAATATGCGTGCACTTAACAGAGTATTCGGACTCGAGACAGATATTTCCTTGTTGGAACAGAAGATTCGAGCCAAGATGGAGCAGACCCAAAAGTAA

Network for GWHGAAZE029842

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05201.16	GlutR_N	11	161	2.10E-42
PF01488.21	Shikimate_DH	176	318	3.80E-45
PF00745.21	GlutR_dimer	332	436	1.60E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02492	hemA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0033014	biological_process	tetrapyrrole biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0008883	molecular_function	glutamyl-tRNA reductase activity
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.746
	SRR3591706	second leaf	18.936
	SRR3591707	mature leaf	24.653
	SRR3591708	Shoot apex	22.430
	SRR3591709	Stem	30.716
	SRR3591710	White floral bud	35.225
	SRR3591711	White flower	36.644
	SRR3591712	Green floral bud	23.307
	SRR3591713	Yellow flower	54.291
SRP173429	SRR8316895	Juvenile bud stage	99.588
	SRR8316896	Juvenile bud stage	79.286
	SRR8316897	Juvenile bud stage	86.431
	SRR8316894	Third green stage	9.900
	SRR8316900	Third green stage	27.647
	SRR8316901	Third green stage	44.618
	SRR8316898	Complete white stage	6.018
	SRR8316899	Complete white stage	71.194
	SRR8316903	Complete white stage	9.056
	SRR8316902	Silver flowering stage	11.147
	SRR8316904	Silver flowering stage	11.976
	SRR8316905	Silver flowering stage	7.975
	SRR8316906	Gold flowering stage	49.869
	SRR8316907	Gold flowering stage	34.482
	SRR8316908	Gold flowering stage	75.734
SRP132670	SRR6706286	Control	14.403
	SRR6706287	Light intensity 50%	16.084
	SRR6706288	Light intensity 20%	13.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.216
	CNS0095593	Slightly white alabastrum(diploid) 2	48.002
	CNS0095594	Slightly white alabastrum(diploid) 3	55.237
	CNS0095595	Whole white alabastrum(diploid) 2	61.219
	CNS0095596	Whole white alabastrum(diploid) 3	22.105
	CNS0095597	Whole white alabastrum(diploid) 4	48.237
	CNS0095598	Silvery flower (diploied) 1	71.587
	CNS0095599	Silvery flower (diploied) 2	132.985
	CNS0095600	Silvery flower (diploied) 3	62.557
	CNS0095601	Golden flower (diploid) 1	106.926
	CNS0095602	Golden flower (diploid) 2	107.217
	CNS0095603	Golden flower (diploid) 3	108.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.207
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.727
	CNS0095610	Silvery flower (tetraploid) 1	20.013
	CNS0095611	Silvery flower (tetraploid) 2	17.102
	CNS0095612	Silvery flower (tetraploid) 3	18.752
	CNS0095613	Golden flower (tetraploid) 1	24.510
	CNS0095614	Golden flower (tetraploid) 2	31.984
	CNS0095615	Golden flower (tetraploid) 3	27.074
CRA001975	CRR073297	Stem 1	43.826
	CRR073298	Stem 2	43.496
	CRR073299	Stem 3	38.141
	CRR073300	Leaf 1	50.453
	CRR073301	Leaf 2	71.383
	CRR073302	Leaf 3	28.631
	CRR073303	Juvenile bud 1	39.443
	CRR073304	Juvenile bud 2	66.443
	CRR073305	Juvenile bud 3	78.841
	CRR073306	Third green 1	36.564
	CRR073307	Third green 2	34.181
	CRR073308	Third green 3	29.229
	CRR073309	Second white 1	30.581
	CRR073310	Second white 2	31.703
	CRR073311	Second white 3	28.865
	CRR073312	Silver flowering 1	143.589
	CRR073313	Silver flowering 2	136.832
	CRR073314	Silver flowering 3	92.335
	CRR073315	Gold flowering 1	30.728
	CRR073316	Gold flowering 2	85.653
	CRR073317	Gold flowering 3	81.322
	CRR073318	Tawny withering 1	26.029
	CRR073319	Tawny withering 2	131.674
	CRR073320	Tawny withering 3	26.882