Detail information of GWHGAAZE029843


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006422667.10hypothetical protein CICLE_v10028640mg [Citrus clementina]
trEMBLtr|F6HW62|F6HW62_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58926.1}
TAIR10AT4G37880.11E-116LisH/CRA/RING-U-box domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3417875734179905+
GWHAAZE00000009mRNA3417875734179905+
GWHAAZE00000009exon3417875734179905+
GWHAAZE00000009CDS3417875734179905+
Transcript Sequence

Network for GWHGAAZE029843

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10607.10CLTH1462872.60E-32
PF13445.7zf-RING_UBOX3253663.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.138
SRR3591706second leaf12.468
SRR3591707mature leaf10.468
SRR3591708Shoot apex27.629
SRR3591709Stem32.465
SRR3591710White floral bud22.403
SRR3591711White flower35.745
SRR3591712Green floral bud22.716
SRR3591713Yellow flower34.505
SRP173429 SRR8316895Juvenile bud stage 19.268
SRR8316896Juvenile bud stage 31.489
SRR8316897Juvenile bud stage 11.150
SRR8316894Third green stage 10.270
SRR8316900Third green stage 17.023
SRR8316901Third green stage 21.818
SRR8316898Complete white stage 9.873
SRR8316899Complete white stage 25.553
SRR8316903Complete white stage 13.211
SRR8316902Silver flowering stage14.071
SRR8316904Silver flowering stage15.515
SRR8316905Silver flowering stage6.661
SRR8316906Gold flowering stage 20.863
SRR8316907Gold flowering stage 25.215
SRR8316908Gold flowering stage 24.794
SRP132670SRR6706286Control14.504
SRR6706287Light intensity 50%11.649
SRR6706288Light intensity 20%11.909
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.400
CNS0095593Slightly white alabastrum(diploid) 215.165
CNS0095594Slightly white alabastrum(diploid) 319.927
CNS0095595Whole white alabastrum(diploid) 212.353
CNS0095596Whole white alabastrum(diploid) 314.049
CNS0095597Whole white alabastrum(diploid) 414.748
CNS0095598Silvery flower (diploied) 115.374
CNS0095599Silvery flower (diploied) 215.957
CNS0095600Silvery flower (diploied) 326.904
CNS0095601Golden flower (diploid) 111.823
CNS0095602Golden flower (diploid) 228.300
CNS0095603Golden flower (diploid) 326.749
CNS0095604Slightly white alabastrum(tetraploid) 119.377
CNS0095605Slightly white alabastrum(tetraploid) 218.451
CNS0095606Slightly white alabastrum(tetraploid) 324.297
CNS0095607Whole white alabastrum(tetraploid) 111.369
CNS0095608Whole white alabastrum(tetraploid) 210.469
CNS0095609Whole white alabastrum(tetraploid) 319.071
CNS0095610Silvery flower (tetraploid) 125.107
CNS0095611Silvery flower (tetraploid) 225.012
CNS0095612Silvery flower (tetraploid) 317.552
CNS0095613Golden flower (tetraploid) 123.673
CNS0095614Golden flower (tetraploid) 224.150
CNS0095615Golden flower (tetraploid) 336.255
CRA001975CRR073297Stem 124.174
CRR073298Stem 221.665
CRR073299Stem 329.541
CRR073300Leaf 115.421
CRR073301Leaf 216.959
CRR073302Leaf 318.147
CRR073303Juvenile bud 115.734
CRR073304Juvenile bud 216.698
CRR073305Juvenile bud 315.756
CRR073306Third green 17.440
CRR073307Third green 212.125
CRR073308Third green 39.641
CRR073309Second white 119.750
CRR073310Second white 214.329
CRR073311Second white 313.225
CRR073312Silver flowering 112.048
CRR073313Silver flowering 213.294
CRR073314Silver flowering 314.311
CRR073315Gold flowering 113.210
CRR073316Gold flowering 216.058
CRR073317Gold flowering 312.625
CRR073318Tawny withering 119.291
CRR073319Tawny withering 214.880
CRR073320Tawny withering 321.749