Gene detail

Detail information of GWHGAAZE029861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006487682.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Citrus sinensis]
COG	YP_003248214.1	8E-25	serine/threonine protein kinase
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	4E-176	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|V4SDH8\|V4SDH8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR36880.1}
TAIR10	AT5G10530.1	4E-137	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34535967	34538031	+
GWHAAZE00000009	mRNA	34535967	34538031	+
GWHAAZE00000009	exon	34535967	34536354	+
GWHAAZE00000009	exon	34536425	34538031	+
GWHAAZE00000009	CDS	34535967	34536354	+
GWHAAZE00000009	CDS	34536425	34538031	+

Transcript Sequence
>GWHTAAZE029895 ATGCCGCCTTCTCCTCTCTTCAAGATCTCCATTTTTTACTTCTTTCTTATACTAATCACACATTCAACATCACTTACCTTCGATTTCCCCAACTTTTTTGATCATCAAGGAGAAATAATACTAGGTAATAACGACTCTTACGTCTCCTCCCAAGGCCTCCAAGTCACCCCAAACGAGCTTGGTACTAACCGGAGGCAAAAAGCCGGTCAAGTCACTTACATGAGCCCTCTCCACCTTTGGGACAATAACTCCGGTGAACTAGCCGACTTCTCCACCAATTTCACCTTTGTCATTGACTCCTCTAGTAGCACATCCTATGCTGACGGGCTAGCTTTCTTCCTCGCTCGCAATAATTCTGTTATATCTGCCGGTGGCTATTGGCCTTCCGGGTGGGATCCGGTCAACTCAACCAACTCGCGCATTGGTGATCATGTCGGCATCAATATCAACTCTTTAGGCTCTATTCGGTTCGAGAAGTGGTTTAGTAATATTACCGGTGGGGGAGTAAATGAAGCTTGGGTTAATTATGATGCTACTTCGCAAAATCTAAGTGTAGTCTTCACTGGTTTTCAGAACAATCAAAGAGTAGTCCAATCAGGCCTATCTTACACCGTTGATCTGAGGCAGACGTTGCCTGAGTGGGTTACTTTCGGCTTCTCGGCTGCAACAGGATCAAATTTTCAGAAGAACAGTGTAATATCTTGGAGCTTTACTAGTTCGACTTTGAAGGTAGATGAAGAACAAAACAATGGGGGAAGGCAGAGGAGGAGGAAGAAGAAGATGGGGCTTGTCGCAGGAGTAACCGTTGGTGCGGGTATCTTAGTTGGCGCATGCGCATTGGCCGGCTTTGGTTTGTGGAAGAAGAGGAAAGAGAAAAAAGGACAGGATCTTGGTGTTGATGATTTCATGGACAATGAATTCGAAATGGGTACCGGACCAAAGAAGTTTCCATACAACGAATTAGTGCATGCTACTAATCACTTCGCAGAGAATGGTAAGCTAGGAGAGGGAGGGTTTGGTGGGGTATATAAAGGTTTTTTAAGGGACTCGAGCACTTATATTGCTGTTAAAAGGGTGTCAAGTACTTCTAGACAAGGAATAAAGGAATACGCTGCTGAAGTAAAGATCATTAGCCAGTTAAGGCATAGGAATTTGGTGCAACTAATCGGTTGGTGCCATGAAAAAGGAGAGCTTCTTCTTGTTTACGAGTTCATGGGAAATGGAAGCTTAGATTCTCATCTATTTAATGAAAAAAGTTTGTTGACATGGGAAACAAGGTTCAAAATTGCTCAAGGTCTGGCGTCGGCTTTGCTCTATCTACATGAAGAATGGGAGCAATGCGTGGTGCATAGGGATATAAAATCGAGCAACGTTATGTTGGATACAAATTTCAATGCGAAACTCGGGGATTTTGGCTTAGCTAGGCTAGTTGACCATGAAAAAGGGGCTCAAACAACAGTTGTGGCTGGGACCATGGGCTACATGGCTCCTGAATGCATGGAAACGGGCAAGGCTAGCAAAGAATCAGATGTCTTTAGCTTTGGTGTGGTTGCTCTAGAAATAGCTTGTGGACGAAAGCCCGTAGACTTTAAAGTACACGAAAGTCAAATAAGAATGGTGGAGTGGGTTTGGAACCTTTATGGATCGGGGGAGCTTCTTGATGCAGTGGATCCAAAGATGGACTCGGATTTTGATGATCAAGAAATGGAACGGTTGATGATTGTTGGGCTTTGGTGTGCCTACCCAGATTGGAAGCTTCGGCCATCTATAAGGCAAGCTATTCATGTACTTAACCTTGAAGCTCCTTTGCCCAATCTCCCTTCAAAGATGCCAGTGGCGACGTATTTTCCTCCTCCTGTATCATTGTTTTCTTTAACTTATGCGCAGAGTAGCCAAGTCAATGCTTCGAGCTATAGTTATAACACTGATTCGTCAAAGGTCACGACATCTTCTGCAGGATCTTCTCCAAATGCATCACTTTTGTACAAGAAGTAA

Network for GWHGAAZE029861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	25	120	2.60E-20
PF00139.20	Lectin_legB	142	248	2.20E-27
PF00069.26	Pkinase	329	595	1.00E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030246	molecular_function	carbohydrate binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.163
	SRR3591712	Green floral bud	0.059
	SRR3591713	Yellow flower	0.062
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.024
	SRR8316899	Complete white stage	0.044
	SRR8316903	Complete white stage	0.084
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.007
	SRR8316905	Silver flowering stage	0.013
	SRR8316906	Gold flowering stage	0.371
	SRR8316907	Gold flowering stage	0.491
	SRR8316908	Gold flowering stage	0.726
SRP132670	SRR6706286	Control	0.062
	SRR6706287	Light intensity 50%	0.073
	SRR6706288	Light intensity 20%	0.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.031
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.038
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.218
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.115
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.055
	CNS0095611	Silvery flower (tetraploid) 2	0.195
	CNS0095612	Silvery flower (tetraploid) 3	0.092
	CNS0095613	Golden flower (tetraploid) 1	0.453
	CNS0095614	Golden flower (tetraploid) 2	0.041
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.113
	CRR073305	Juvenile bud 3	0.064
	CRR073306	Third green 1	0.154
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	0.027
	CRR073310	Second white 2	0.264
	CRR073311	Second white 3	0.071
	CRR073312	Silver flowering 1	0.580
	CRR073313	Silver flowering 2	0.067
	CRR073314	Silver flowering 3	0.384
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.019
	CRR073319	Tawny withering 2	0.088
	CRR073320	Tawny withering 3	0.000