Gene detail

Detail information of GWHGAAZE029886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004290413.1	2.8892E-120	PREDICTED: carbonic anhydrase, chloroplastic-like [Fragaria vesca subsp. vesca]
COG	YP_008546886.1	3E-38	carbonate dehydratase
Swissprot	tr\|Q94CE3\|BCA5_ARATH	2E-99	Beta carbonic anhydrase 5, chloroplastic (Precursor)
trEMBL	tr\|A0A061E269\|A0A061E269_THECC	2E-118	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}
TAIR10	AT4G33580.1	7E-81	beta carbonic anhydrase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34844507	34848736	+
GWHAAZE00000009	mRNA	34844507	34848736	+
GWHAAZE00000009	exon	34844507	34844760	+
GWHAAZE00000009	exon	34844862	34844911	+
GWHAAZE00000009	exon	34846007	34846138	+
GWHAAZE00000009	exon	34846256	34846290	+
GWHAAZE00000009	exon	34846664	34846755	+
GWHAAZE00000009	exon	34846885	34846938	+
GWHAAZE00000009	exon	34847413	34847495	+
GWHAAZE00000009	exon	34847597	34847702	+
GWHAAZE00000009	exon	34848551	34848736	+
GWHAAZE00000009	five_prime_UTR	34844507	34844697	+
GWHAAZE00000009	CDS	34844698	34844760	+
GWHAAZE00000009	CDS	34844862	34844911	+
GWHAAZE00000009	CDS	34846007	34846138	+
GWHAAZE00000009	CDS	34846256	34846290	+
GWHAAZE00000009	CDS	34846664	34846755	+
GWHAAZE00000009	CDS	34846885	34846938	+
GWHAAZE00000009	CDS	34847413	34847495	+
GWHAAZE00000009	CDS	34847597	34847702	+
GWHAAZE00000009	CDS	34848551	34848736	+

Transcript Sequence
>GWHTAAZE029920 GAGAAGAAACAAGTATTTCTTTGATCTAACCAACACCCAACTACACACAAACAAATATTCATTTCATCATATATCTCCCTCTGTGTGTATATATATCTGGCGTCAATAATTTGTGAAGTGTCATCTCTACATTTTTCTTTCTTTCAGCACCCTATAATTAGGCCATCTGTTTAGAGCTATATATCTCTTTAATGGCTCAAATAGTTCTTCCATCTTGTTCTCTATCCAATACTTCCACTGCTAATACATCAAAGATCTCTGGTTCCAAGTTGAAATTCTCGGGAAACAAACAGACCCAATATAGGAGCAATTTGGCTCTAATATTGAAAGCCTCGGGGGACGCTCCGGGACTGACTCAGGAACTCACAAGCAACAAACAGAAGAGCGTAGTGGAGACTCAGAATGGGTCTGACTTGTTCAATGAGATGAAACATCGGGAAAACTTGGAATGCTATCAAAATCTTGCTAAAGATTCAAGGGTTTGCCCCTCTAACATCCTAGGATTTCAACCTGGAGACGCCTTTCTAGTTCGGAATGTGGCAAATCTAGTCCCCCCATTTGAGAGTCCACCCTTCGAAACAAAAGCTGCCCTTGAATTTTCGGTAAATACCCTTGAAGTTCCCAATATACTAGTAATTGGCCACAGCTGCTGTGGAGGCATTCGTGCTCTAATGAGTATGCAAGATGAAGTAAATTCAAGTAGCTTTATTAGAAGTTGGGTAGTTGTTGGAAAGAACGCAAGGTTAAGCACAAAGGCTGTTGCCTCCAACCTCAGCTTTGACCAGCAGTGCAGACACTGTGAGAAGGAATCTGTCAACCGCTCATTGTCAAACTTGCTCACATACCCATGGATAGAAGAAAGGGTAAAGAAAGGCGAGCTTTCTATTCATGGAGGCTACTATGATTTCATTGACTGTACTTTTGAGAAGTGGTCAATTGATTACCAGGCGAGTGGCACATTCTCTCTCAGAAATAGAGAATTTTGGTCTTGA

Network for GWHGAAZE029886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00484.20	Pro_CA	94	240	1.30E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01673	cynT, can	Metabolic pathways	map01100
K01673	cynT, can	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.356
	SRR3591706	second leaf	69.964
	SRR3591707	mature leaf	31.576
	SRR3591708	Shoot apex	45.014
	SRR3591709	Stem	11.709
	SRR3591710	White floral bud	34.956
	SRR3591711	White flower	15.970
	SRR3591712	Green floral bud	25.405
	SRR3591713	Yellow flower	15.392
SRP173429	SRR8316895	Juvenile bud stage	9.639
	SRR8316896	Juvenile bud stage	13.620
	SRR8316897	Juvenile bud stage	6.181
	SRR8316894	Third green stage	7.295
	SRR8316900	Third green stage	28.185
	SRR8316901	Third green stage	28.081
	SRR8316898	Complete white stage	13.575
	SRR8316899	Complete white stage	22.756
	SRR8316903	Complete white stage	24.926
	SRR8316902	Silver flowering stage	8.088
	SRR8316904	Silver flowering stage	10.828
	SRR8316905	Silver flowering stage	2.986
	SRR8316906	Gold flowering stage	11.801
	SRR8316907	Gold flowering stage	9.172
	SRR8316908	Gold flowering stage	9.489
SRP132670	SRR6706286	Control	24.774
	SRR6706287	Light intensity 50%	32.238
	SRR6706288	Light intensity 20%	35.459
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.807
	CNS0095593	Slightly white alabastrum(diploid) 2	16.323
	CNS0095594	Slightly white alabastrum(diploid) 3	15.755
	CNS0095595	Whole white alabastrum(diploid) 2	21.523
	CNS0095596	Whole white alabastrum(diploid) 3	27.760
	CNS0095597	Whole white alabastrum(diploid) 4	19.783
	CNS0095598	Silvery flower (diploied) 1	7.420
	CNS0095599	Silvery flower (diploied) 2	6.834
	CNS0095600	Silvery flower (diploied) 3	6.275
	CNS0095601	Golden flower (diploid) 1	4.387
	CNS0095602	Golden flower (diploid) 2	3.399
	CNS0095603	Golden flower (diploid) 3	3.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.911
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.391
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.966
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.600
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.519
	CNS0095610	Silvery flower (tetraploid) 1	18.893
	CNS0095611	Silvery flower (tetraploid) 2	8.662
	CNS0095612	Silvery flower (tetraploid) 3	36.703
	CNS0095613	Golden flower (tetraploid) 1	12.016
	CNS0095614	Golden flower (tetraploid) 2	13.527
	CNS0095615	Golden flower (tetraploid) 3	6.906
CRA001975	CRR073297	Stem 1	8.499
	CRR073298	Stem 2	9.005
	CRR073299	Stem 3	3.956
	CRR073300	Leaf 1	22.223
	CRR073301	Leaf 2	18.266
	CRR073302	Leaf 3	12.344
	CRR073303	Juvenile bud 1	11.698
	CRR073304	Juvenile bud 2	13.374
	CRR073305	Juvenile bud 3	11.596
	CRR073306	Third green 1	23.030
	CRR073307	Third green 2	16.659
	CRR073308	Third green 3	20.336
	CRR073309	Second white 1	9.425
	CRR073310	Second white 2	13.544
	CRR073311	Second white 3	13.739
	CRR073312	Silver flowering 1	7.788
	CRR073313	Silver flowering 2	7.842
	CRR073314	Silver flowering 3	3.883
	CRR073315	Gold flowering 1	21.308
	CRR073316	Gold flowering 2	25.588
	CRR073317	Gold flowering 3	13.665
	CRR073318	Tawny withering 1	17.551
	CRR073319	Tawny withering 2	11.095
	CRR073320	Tawny withering 3	19.586