Detail information of GWHGAAZE029898


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009601642.16.52734E-73PREDICTED: uncharacterized protein LOC104096897 [Nicotiana tomentosiformis]
trEMBLtr|W6JJ96|W6JJ96_NICBE4E-71Nuclear pore complex protein NDC1a {ECO:0000313|EMBL:BAO49728.1}
TAIR10AT1G73240.13E-42Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3499361434996080-
GWHAAZE00000009mRNA3499361434996080-
GWHAAZE00000009exon3499582334996080-
GWHAAZE00000009exon3499546934995677-
GWHAAZE00000009exon3499361434993827-
GWHAAZE00000009CDS3499582334996080-
GWHAAZE00000009CDS3499546934995677-
GWHAAZE00000009CDS3499361434993827-
Transcript Sequence

Network for GWHGAAZE029898

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14315NDC1, TMEM48 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.854
SRR3591706second leaf0.887
SRR3591707mature leaf0.908
SRR3591708Shoot apex3.344
SRR3591709Stem0.954
SRR3591710White floral bud0.981
SRR3591711White flower0.345
SRR3591712Green floral bud1.589
SRR3591713Yellow flower0.326
SRP173429 SRR8316895Juvenile bud stage 2.061
SRR8316896Juvenile bud stage 4.713
SRR8316897Juvenile bud stage 1.498
SRR8316894Third green stage 2.556
SRR8316900Third green stage 6.296
SRR8316901Third green stage 3.923
SRR8316898Complete white stage 2.436
SRR8316899Complete white stage 10.802
SRR8316903Complete white stage 3.048
SRR8316902Silver flowering stage2.135
SRR8316904Silver flowering stage2.855
SRR8316905Silver flowering stage0.952
SRR8316906Gold flowering stage 2.272
SRR8316907Gold flowering stage 3.067
SRR8316908Gold flowering stage 2.139
SRP132670SRR6706286Control2.931
SRR6706287Light intensity 50%4.046
SRR6706288Light intensity 20%4.761
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.283
CNS0095593Slightly white alabastrum(diploid) 23.202
CNS0095594Slightly white alabastrum(diploid) 32.036
CNS0095595Whole white alabastrum(diploid) 23.926
CNS0095596Whole white alabastrum(diploid) 33.967
CNS0095597Whole white alabastrum(diploid) 43.765
CNS0095598Silvery flower (diploied) 14.566
CNS0095599Silvery flower (diploied) 22.577
CNS0095600Silvery flower (diploied) 34.163
CNS0095601Golden flower (diploid) 14.937
CNS0095602Golden flower (diploid) 24.170
CNS0095603Golden flower (diploid) 33.175
CNS0095604Slightly white alabastrum(tetraploid) 15.003
CNS0095605Slightly white alabastrum(tetraploid) 22.764
CNS0095606Slightly white alabastrum(tetraploid) 36.480
CNS0095607Whole white alabastrum(tetraploid) 11.859
CNS0095608Whole white alabastrum(tetraploid) 22.308
CNS0095609Whole white alabastrum(tetraploid) 33.828
CNS0095610Silvery flower (tetraploid) 12.964
CNS0095611Silvery flower (tetraploid) 23.000
CNS0095612Silvery flower (tetraploid) 32.796
CNS0095613Golden flower (tetraploid) 11.288
CNS0095614Golden flower (tetraploid) 21.850
CNS0095615Golden flower (tetraploid) 31.797
CRA001975CRR073297Stem 18.065
CRR073298Stem 26.923
CRR073299Stem 32.971
CRR073300Leaf 15.317
CRR073301Leaf 24.609
CRR073302Leaf 32.512
CRR073303Juvenile bud 12.524
CRR073304Juvenile bud 21.133
CRR073305Juvenile bud 33.453
CRR073306Third green 10.290
CRR073307Third green 20.444
CRR073308Third green 30.000
CRR073309Second white 10.238
CRR073310Second white 20.437
CRR073311Second white 30.187
CRR073312Silver flowering 10.105
CRR073313Silver flowering 20.123
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.550
CRR073316Gold flowering 23.816
CRR073317Gold flowering 30.271
CRR073318Tawny withering 10.988
CRR073319Tawny withering 22.191
CRR073320Tawny withering 32.049