Gene detail

Detail information of GWHGAAZE029906

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009380211.1	1.3251E-167	PREDICTED: 40S ribosomal protein S6 [Musa acuminata subsp. malaccensis]
COG	YP_001737450.1	6E-20	30S ribosomal protein S6e
Swissprot	tr\|Q9M3V8\|RS6_ASPOF	2E-164	40S ribosomal protein S6
trEMBL	tr\|M0RJJ1\|M0RJJ1_MUSAM	5E-168	40S ribosomal protein S6 {ECO:0000256\|PIRNR:PIRNR002129}
TAIR10	AT5G10360.1	9E-114	Ribosomal protein S6e

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35078444	35083468	+
GWHAAZE00000009	mRNA	35078444	35083468	+
GWHAAZE00000009	exon	35078444	35078502	+
GWHAAZE00000009	exon	35078606	35078670	+
GWHAAZE00000009	exon	35081095	35081152	+
GWHAAZE00000009	exon	35081248	35081356	+
GWHAAZE00000009	exon	35082135	35082407	+
GWHAAZE00000009	exon	35083087	35083468	+
GWHAAZE00000009	five_prime_UTR	35078444	35078496	+
GWHAAZE00000009	CDS	35078497	35078502	+
GWHAAZE00000009	CDS	35078606	35078670	+
GWHAAZE00000009	CDS	35081095	35081152	+
GWHAAZE00000009	CDS	35081248	35081356	+
GWHAAZE00000009	CDS	35082135	35082407	+
GWHAAZE00000009	CDS	35083087	35083313	+
GWHAAZE00000009	three_prime_UTR	35083314	35083468	+

Transcript Sequence
>GWHTAAZE029940 TTTTCACAAAAATGCTTCAAAGCCCTCTGTTTTTCAAGGATAATTGAGTGAAGATGAAGTTCAATATAGCCAATCCAACTACAGGATGCCAGAAAAAACTTGAAATTGATGATGATATGAAGCTGCGGGCATTCTTTGACAAGAAGATTTCGCAAGAGGTCAGCGGAGATTCTCTTGGCGAGGAATTCAAAGGCTATGTTTTCAAAATAATGGGTGGCTGTGACAAGCAAGGATTCCCAATGAAACAGGGGGTACTAACTCCCGGTCGTGTTCGTCTACTGCTTCACAGAGGTAGCCCATGCTTTCGAGGTTATGGAAGACGCGATGGAGAGCGAAGGAGGAAATCCGTACGTGGGTGCATTGTGAGTCAAGACCTCTCTGTTTTGAACTTGGTTATAGTGAAGAAGGGTGAGAATGATCTGCCTGGATTGACCGACACAGAGAAACCCCGGATGAGAGGCCCTAAGAGGGCATCAAAGATTCGGAAGCTCTTCAATCTTTCCAAGGATGACGATGTCCGAAAATATGTCAACACCTACCGCCGTACTTTTACTACCAAATCTGGTAAGAAGTGCAGTAAAGCTCCAAAGATACAGCGCCTAGTAACTCCATTGACTCTCCAGAGGAAGAGAGCTAGGATTGCGGAGAAGAAGCAGAGAATTGTCAAGGCCAAGGCAGAGGCAGCTGAGTATCAGAAACTACTTGCTACCCGCTTGAAGGAACAGAGGGAACGCCGTAGTGAGAGCTTAGCCAAAAGGAGGTCCAAGCTTTCTGCTGCTTCTAAACGCTAAGTTGCTCCTTCAACAAATAAAACCATTCTTTTGTCTAGTACTCAAATAATGCATCAGTATTTATATATTATTTTAATTTTTGATCATTTAGTAGTCTACCCCGTTTTAGACATAGGTAGGCCTTGCTTAAACGGATTTTGGAACTGAAGTGAAGC

Network for GWHGAAZE029906

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01092.20	Ribosomal_S6e	1	128	1.30E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02991	RP-S6e, RPS6	Ribosome	map03010
		Apelin signaling pathway	map04371
		HIF-1 signaling pathway	map04066
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Insulin signaling pathway	map04910
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.387
	SRR3591706	second leaf	0.059
	SRR3591707	mature leaf	0.010
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.037
	SRR3591710	White floral bud	0.498
	SRR3591711	White flower	0.321
	SRR3591712	Green floral bud	2.957
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	23.408
	SRR8316896	Juvenile bud stage	59.203
	SRR8316897	Juvenile bud stage	19.300
	SRR8316894	Third green stage	12.762
	SRR8316900	Third green stage	7.584
	SRR8316901	Third green stage	15.137
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.103
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.048
	SRR8316907	Gold flowering stage	0.128
	SRR8316908	Gold flowering stage	0.080
SRP132670	SRR6706286	Control	2.444
	SRR6706287	Light intensity 50%	1.787
	SRR6706288	Light intensity 20%	1.138
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.563
	CNS0095593	Slightly white alabastrum(diploid) 2	28.013
	CNS0095594	Slightly white alabastrum(diploid) 3	66.781
	CNS0095595	Whole white alabastrum(diploid) 2	7.455
	CNS0095596	Whole white alabastrum(diploid) 3	10.478
	CNS0095597	Whole white alabastrum(diploid) 4	3.315
	CNS0095598	Silvery flower (diploied) 1	0.408
	CNS0095599	Silvery flower (diploied) 2	0.223
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.049
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.339
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.624
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.716
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.477
	CNS0095610	Silvery flower (tetraploid) 1	0.315
	CNS0095611	Silvery flower (tetraploid) 2	0.063
	CNS0095612	Silvery flower (tetraploid) 3	0.223
	CNS0095613	Golden flower (tetraploid) 1	0.276
	CNS0095614	Golden flower (tetraploid) 2	0.258
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	20.154
	CRR073298	Stem 2	18.023
	CRR073299	Stem 3	15.328
	CRR073300	Leaf 1	2.099
	CRR073301	Leaf 2	6.949
	CRR073302	Leaf 3	9.717
	CRR073303	Juvenile bud 1	0.747
	CRR073304	Juvenile bud 2	0.205
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.077
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.204
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.008
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.104
	CRR073319	Tawny withering 2	0.276
	CRR073320	Tawny withering 3	0.000