Detail information of GWHGAAZE029907


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006423810.13.951E-165hypothetical protein CICLE_v10028615mg [Citrus clementina]
COGYP_007079178.15E-661,4-dihydroxy-2-naphthoate phytyltransferase
Swissprottr|Q0WUA3|MENA_ARATH4E-1391,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic (Precursor)
trEMBLtr|V4SDZ0|V4SDZ0_9ROSI1E-165Uncharacterized protein {ECO:0000313|EMBL:ESR37050.1}
TAIR10AT1G60600.23E-104UbiA prenyltransferase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3508409735088030-
GWHAAZE00000009mRNA3508409735088030-
GWHAAZE00000009exon3508802035088030-
GWHAAZE00000009exon3508742935087681-
GWHAAZE00000009exon3508706835087171-
GWHAAZE00000009exon3508654235086613-
GWHAAZE00000009exon3508628335086418-
GWHAAZE00000009exon3508579335085899-
GWHAAZE00000009exon3508557535085665-
GWHAAZE00000009exon3508545935085497-
GWHAAZE00000009exon3508511035085238-
GWHAAZE00000009exon3508490235084967-
GWHAAZE00000009exon3508409735084234-
GWHAAZE00000009CDS3508802035088030-
GWHAAZE00000009CDS3508742935087681-
GWHAAZE00000009CDS3508706835087171-
GWHAAZE00000009CDS3508654235086613-
GWHAAZE00000009CDS3508628335086418-
GWHAAZE00000009CDS3508579335085899-
GWHAAZE00000009CDS3508557535085665-
GWHAAZE00000009CDS3508545935085497-
GWHAAZE00000009CDS3508511035085238-
GWHAAZE00000009CDS3508490235084967-
GWHAAZE00000009CDS3508409735084234-
Transcript Sequence

Network for GWHGAAZE029907

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01040.19UbiA843421.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K23094ABC4, menA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0042372biological_processphylloquinone biosynthetic process
GO:0016021cellular_componentintegral component of membrane
GO:0004659molecular_functionprenyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.513
SRR3591706second leaf53.157
SRR3591707mature leaf28.047
SRR3591708Shoot apex50.219
SRR3591709Stem31.147
SRR3591710White floral bud18.025
SRR3591711White flower26.920
SRR3591712Green floral bud4.671
SRR3591713Yellow flower24.857
SRP173429 SRR8316895Juvenile bud stage 12.459
SRR8316896Juvenile bud stage 16.207
SRR8316897Juvenile bud stage 10.535
SRR8316894Third green stage 4.904
SRR8316900Third green stage 7.887
SRR8316901Third green stage 6.550
SRR8316898Complete white stage 1.788
SRR8316899Complete white stage 5.464
SRR8316903Complete white stage 4.656
SRR8316902Silver flowering stage3.833
SRR8316904Silver flowering stage3.890
SRR8316905Silver flowering stage2.098
SRR8316906Gold flowering stage 7.275
SRR8316907Gold flowering stage 9.486
SRR8316908Gold flowering stage 16.739
SRP132670SRR6706286Control7.004
SRR6706287Light intensity 50%4.914
SRR6706288Light intensity 20%4.506
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.278
CNS0095593Slightly white alabastrum(diploid) 28.224
CNS0095594Slightly white alabastrum(diploid) 38.210
CNS0095595Whole white alabastrum(diploid) 26.674
CNS0095596Whole white alabastrum(diploid) 34.301
CNS0095597Whole white alabastrum(diploid) 45.547
CNS0095598Silvery flower (diploied) 121.513
CNS0095599Silvery flower (diploied) 227.057
CNS0095600Silvery flower (diploied) 37.091
CNS0095601Golden flower (diploid) 127.309
CNS0095602Golden flower (diploid) 28.622
CNS0095603Golden flower (diploid) 38.573
CNS0095604Slightly white alabastrum(tetraploid) 16.722
CNS0095605Slightly white alabastrum(tetraploid) 28.473
CNS0095606Slightly white alabastrum(tetraploid) 318.276
CNS0095607Whole white alabastrum(tetraploid) 16.677
CNS0095608Whole white alabastrum(tetraploid) 23.094
CNS0095609Whole white alabastrum(tetraploid) 35.424
CNS0095610Silvery flower (tetraploid) 119.940
CNS0095611Silvery flower (tetraploid) 210.386
CNS0095612Silvery flower (tetraploid) 35.425
CNS0095613Golden flower (tetraploid) 19.480
CNS0095614Golden flower (tetraploid) 220.763
CNS0095615Golden flower (tetraploid) 32.615
CRA001975CRR073297Stem 18.067
CRR073298Stem 27.355
CRR073299Stem 34.919
CRR073300Leaf 12.889
CRR073301Leaf 23.693
CRR073302Leaf 32.253
CRR073303Juvenile bud 11.803
CRR073304Juvenile bud 20.433
CRR073305Juvenile bud 31.130
CRR073306Third green 10.339
CRR073307Third green 20.000
CRR073308Third green 30.310
CRR073309Second white 10.162
CRR073310Second white 20.322
CRR073311Second white 30.463
CRR073312Silver flowering 10.604
CRR073313Silver flowering 20.267
CRR073314Silver flowering 30.524
CRR073315Gold flowering 14.968
CRR073316Gold flowering 27.450
CRR073317Gold flowering 33.501
CRR073318Tawny withering 14.068
CRR073319Tawny withering 23.950
CRR073320Tawny withering 34.948