Gene detail

Detail information of GWHGAAZE029915

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00597.1	0	unnamed protein product [Coffea canephora]
COG	YP_007109585.1	3E-61	amine oxidase
Swissprot	tr\|Q8VXV7\|LDL1_ARATH	0	Lysine-specific histone demethylase 1 homolog 1
trEMBL	tr\|A0A068TX28\|A0A068TX28_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00597.1}
TAIR10	AT1G62830.1	0	LSD1-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35265184	35268113	+
GWHAAZE00000009	mRNA	35265184	35268113	+
GWHAAZE00000009	exon	35265184	35266012	+
GWHAAZE00000009	exon	35266474	35268113	+
GWHAAZE00000009	CDS	35265184	35266012	+
GWHAAZE00000009	CDS	35266474	35268113	+

Transcript Sequence
>GWHTAAZE029949 CCTAGTCCCGCACGCACCGGCACTTCCTCTTCGTTCTTCTTCGCCAGCGATAACACAACTGAAAACCCACCAATGGAATCCCCACCTGAAGAACTCTCCGACAACCCCAACAACAATGCCACCTCCTCCTCCTCCCCTTCTCTCGAAAACAACCCCTCTCCTCCACAAACCACACCCGAACCTCCGCCAGTTGACGCCACCTCCGTCCCCGAGAACAACCTCCCGGTCCAACCCGCCGAACCCGGTCCACCACCTCCAAAAAAACGACGCCGTCGAAAGAAGCAGTTTCCCGAGATGATCTCATCCAACGGCCTCCGCATCATGCGAACAAACCCTAAATCCACCGCAAATTCCACAGAGGAGATGGATCTGATAGATGAAGATCCATCAATCTCTAAGAACCGCCGCCGTAGGATATCAGATCTGGCCAAGGAAGTCGACGTCGAAGCCCTAATCGCAATCTCCGTCGGTTTCCCCGTCGATTCTCTCACCGAAGAGGAGATTGAGGCTAACGTCGTTAAGCAAATAGGAGGGATCGAACAGGCAAACTATATTGTTGTTAGGAATCATATCCTTGCGCGGTGGAGATCGAATGTGTCAGTTTGGTTAACGAAGGATCATGCATTGGAATCAATTCGAGTGGAGCATTTAGGGCTTGTGAATTCCGCGTATACTTTTTTGCTTCATCACGGTTACATCAATTTTGGCGTTGCTCCGGCCGTCAGAGAGGCTAAATTGCGGCCGCCAGAGGGTGGATTGAATGTTGATGTTGTCATTGTTGGTGCTGGACTTGCCGGATTGGTTGCCGCCAGGCAGTTGATTTTTCTAGGGTTCAAAGTTGTTGTGTTGGAAGGGAGGAACCGTCCCGGTGGCCGCGTCCGCACGAAGAAGATGACAGGCGATAACGGAGTTGTTGCCGCAGCTGATCTCGGTGGCAGTGTTCTCACCGGCATCAATGGAAATCCACTTGGTGTTCTTGCTAGGCAGCTAGGGTTTCCACTTCACAAGGTGAGAGATATATGCCCTCTTTATCTGCCCAATGGTAGAACTGTAAACCCTGATATTGATTCTCGAGTGGAAGTTACTTTTAATAAATTATTAGATAGAGTTTGTAAGCTTAGGCAGGGAATGATGGAGGAAGTTAGATCAGTAGATGTCTCTTTGGGGACAGCTTTAGAAGCTTTTCGCAATGTTTATGGAGTTGCCAAGGATCCGCAAGAACGAATGCTGTTGGATTGGCACCTCGCAAATTTGGAATACGCTAATGCAACTTTAATGTCGAATTTGTCAATGGCATTTTGGGATCAAGATGATCCATATGAGATGGGTGGTGATCATTGCTTCATTCCTGGAGGTAATGAGAGGTTTATTCGGGCATTGTCTGAAGATCTCCCCATTTTCTATGATCGGCCGGTGGAGAGTATACGCTATGGTGCTGACGGGGTTATGGTGTATGCGGGTGGGCAAGAATATCGCGGTGACATGGTTCTTTGCACTGTCCCACTCGGAGTGCTTAAGAAGGGCTCCATTGAGTTTGTTCCTGAGCTTCCTAAGCGAAAGAAAGATGCTATTGATAGATTAGGGTTTGGGTTATTGAATAAGGTTGCTATCTTGTTTCCCTACGATTTTTGGGGCGGAGAGATTGATACATTCGGTCATTTGGCACAAGATTCAAGTATGAGAGGCGAGTTCTTTTTGTTTTATAGTTATTCTTCTGTATCGGGTGGTCCACTTCTTGTAGCGCTTGTGGCCGGAGAAGCAGCAATTAAATTTGAACAGCTATCTCCGGTGGAATCTGTGAGTAGGGTTATGGCTATATTGAAGGGCATTTTCAATCCGAAAGGGATTGCTGTTCCAGACCCACTTCAAGCAATTTGTACCCGATGGGGACAAGATCAGTGCACTTACGGATCTTACTCTTATGTTGCAATAGGGGCCTCGGGAGACGATTACGATATTCTTGCGGAAAGTATTGGGGATGGGAGAGTTTTCTTTGCAGGTGAGGCGACAAATAAGCAATATCCGGCCACAATGCACGGAGCTTTCCTTAGTGGGATGAGAGAGGCGGCTAATATGTTGAGAGTTGCTAAGAGGAGGTCCTTGATTCCGGCAGATAGGACTAATGATGCTAGTGGGGAAAGTGAGAATTTAGATAATTTATTTGAGAAGCCTGACCTTACATTTGGTTGCTTCTCGGTTCTGTTTGATCCAATTTCTAGTGACCTGGAATCTAATTCTTTGGTAAGAGTGGCATTCAAAGGCGAGAAAATGGACTCTAGTTGTTTATATCTGTACGGGTTGATCAAGAGGAAGCAGATTGAGGAGCTGAGTCGGGTGAATGGAGAGGTTAACAGGATGAAGACTTTAAATCGAGAGTATCATGTAAAATTGGTTGGGAGAAAAAGTTTATGCAGCACTGCAGAATCTCTTATCACTAGCATTAGATCCAGTAGGGCCAGCATAAGCTGA

Network for GWHGAAZE029915

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	158	235	3.20E-13
PF01593.25	Amino_oxidase	264	693	2.80E-94

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.554
	SRR3591706	second leaf	6.754
	SRR3591707	mature leaf	4.424
	SRR3591708	Shoot apex	14.417
	SRR3591709	Stem	8.517
	SRR3591710	White floral bud	10.577
	SRR3591711	White flower	9.153
	SRR3591712	Green floral bud	10.565
	SRR3591713	Yellow flower	6.079
SRP173429	SRR8316895	Juvenile bud stage	9.793
	SRR8316896	Juvenile bud stage	12.926
	SRR8316897	Juvenile bud stage	4.107
	SRR8316894	Third green stage	5.806
	SRR8316900	Third green stage	16.612
	SRR8316901	Third green stage	14.957
	SRR8316898	Complete white stage	5.055
	SRR8316899	Complete white stage	20.261
	SRR8316903	Complete white stage	9.057
	SRR8316902	Silver flowering stage	3.500
	SRR8316904	Silver flowering stage	4.505
	SRR8316905	Silver flowering stage	2.612
	SRR8316906	Gold flowering stage	7.882
	SRR8316907	Gold flowering stage	6.845
	SRR8316908	Gold flowering stage	6.595
SRP132670	SRR6706286	Control	16.063
	SRR6706287	Light intensity 50%	15.981
	SRR6706288	Light intensity 20%	15.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.691
	CNS0095593	Slightly white alabastrum(diploid) 2	8.575
	CNS0095594	Slightly white alabastrum(diploid) 3	9.588
	CNS0095595	Whole white alabastrum(diploid) 2	10.245
	CNS0095596	Whole white alabastrum(diploid) 3	9.332
	CNS0095597	Whole white alabastrum(diploid) 4	10.993
	CNS0095598	Silvery flower (diploied) 1	10.176
	CNS0095599	Silvery flower (diploied) 2	7.716
	CNS0095600	Silvery flower (diploied) 3	11.163
	CNS0095601	Golden flower (diploid) 1	10.003
	CNS0095602	Golden flower (diploid) 2	12.422
	CNS0095603	Golden flower (diploid) 3	12.294
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.953
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.479
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.844
	CNS0095610	Silvery flower (tetraploid) 1	9.501
	CNS0095611	Silvery flower (tetraploid) 2	9.062
	CNS0095612	Silvery flower (tetraploid) 3	7.855
	CNS0095613	Golden flower (tetraploid) 1	3.860
	CNS0095614	Golden flower (tetraploid) 2	8.012
	CNS0095615	Golden flower (tetraploid) 3	7.117
CRA001975	CRR073297	Stem 1	20.219
	CRR073298	Stem 2	19.025
	CRR073299	Stem 3	20.839
	CRR073300	Leaf 1	18.300
	CRR073301	Leaf 2	18.705
	CRR073302	Leaf 3	14.559
	CRR073303	Juvenile bud 1	12.757
	CRR073304	Juvenile bud 2	12.382
	CRR073305	Juvenile bud 3	17.587
	CRR073306	Third green 1	4.605
	CRR073307	Third green 2	3.068
	CRR073308	Third green 3	4.469
	CRR073309	Second white 1	2.019
	CRR073310	Second white 2	2.350
	CRR073311	Second white 3	2.498
	CRR073312	Silver flowering 1	3.088
	CRR073313	Silver flowering 2	2.953
	CRR073314	Silver flowering 3	1.769
	CRR073315	Gold flowering 1	5.222
	CRR073316	Gold flowering 2	5.116
	CRR073317	Gold flowering 3	4.261
	CRR073318	Tawny withering 1	9.375
	CRR073319	Tawny withering 2	7.030
	CRR073320	Tawny withering 3	8.771