Gene detail

Detail information of GWHGAAZE029918

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002270407.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8LAM0\|UBP4_ARATH	Ubiquitin carboxyl-terminal hydrolase 4
trEMBL	tr\|F6HWM1\|F6HWM1_VITVI	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT2G22310.1	ubiquitin-specific protease 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35307091	35312160	+
GWHAAZE00000009	mRNA	35307091	35312160	+
GWHAAZE00000009	exon	35307091	35307242	+
GWHAAZE00000009	exon	35308023	35308139	+
GWHAAZE00000009	exon	35308924	35309022	+
GWHAAZE00000009	exon	35309809	35309994	+
GWHAAZE00000009	exon	35310702	35310883	+
GWHAAZE00000009	exon	35311758	35312160	+
GWHAAZE00000009	five_prime_UTR	35307091	35307125	+
GWHAAZE00000009	CDS	35307126	35307242	+
GWHAAZE00000009	CDS	35308023	35308139	+
GWHAAZE00000009	CDS	35308924	35309022	+
GWHAAZE00000009	CDS	35309809	35309994	+
GWHAAZE00000009	CDS	35310702	35310883	+
GWHAAZE00000009	CDS	35311758	35312160	+

Transcript Sequence
>GWHTAAZE029952 TAATAGACGAGTTTTGGTATTTGGTGGATGGTCTCATGGGCGCGACGGGTTCGAAGCTCGAGAAAGCTCTCGGAGACCAGTTCCCTGAAGGCGAACGATACTTTGGACTCGAGAATTTCGGTAATACTTGCTACTGCAACAGCGTTTTGCAGGCTCTCTATTTCTGTGTTCCATTTCGTGAACAGCTACTAGACTATTATGGAAATAACAAAAATCCAGTAGAGGCAGAAGAGAATCTCCTCACTTGTTTGGCGGAATTATTTACCCAGATAAGTTCACAGAAGAAGAAAACAGGTGTAATTGCTCCCAAACGATTTGTGCAGAGAGTGAAGAAACAAAATGAGAATTTTCGCGGCTACATGCATCAGGATGCCCATGAATTTTTGAACTTCCTGTTAAATGAACTTGTCGACATACTGGAGCAAGAGACCAATGCAGCAAAAAGTTCAGAAGGTTCTTCTCCTCCTGAAAAGATTGCAAATGGGCCAAAGAATCTTCAGGTCAATGGTGTTAGGAAGGAGCCTCTAGTTACCTGGGTTCACGAAAATTTTCAGGGTATACTTACCAATGAGACGAGGTGCTTGAGGTGTGAGACAGTGACTGCAAGGGATGAGACCTTCTTAGACTTGAGCCTTGACATTGAACAGAACACTTCAATTACAAGCTGCCTTAAGAATTTCAGTTCCACAGAGACTTTAAATGCTGAAGATAAATTCTTCTGTGACAAGTGCTGTAGCTTGCAAGAAGCCCAGAAGAGGATGAAGATAAAGAAACCGCCCCACATCCTTGTTATTCACCTCAAGCGTTTCAAGTACATGGAACAGCTCGGCCGGTACAAGAAACTTTCGTACCGCGTCGTTTTCCCTTTGGAGTTGAAACTGAGCAACACTGTGGACAACTCTGACTCCGAATACTCTTTATTCGCTGTGGTGGTTCACGTTGGTAGTGGGCCCAATCATGGCCACTATGTTAGCCTTGTTAAAAGCCACAACCACTGGCTGTTCTTTGATGATGAGAACGTTGAGATGATTGATGAATCGGCAGTTCAAACTTCCTTTGGATCAGCTCAGGAGTATTCAAGTAATACGGATCACGGGTACATCCTCTTCTATGAGAGCCTCGCTACCAAACAGCAGTAA

Network for GWHGAAZE029918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	23	359	3.40E-63

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.539
	SRR3591706	second leaf	20.577
	SRR3591707	mature leaf	27.724
	SRR3591708	Shoot apex	28.707
	SRR3591709	Stem	38.618
	SRR3591710	White floral bud	31.924
	SRR3591711	White flower	33.875
	SRR3591712	Green floral bud	30.073
	SRR3591713	Yellow flower	30.636
SRP173429	SRR8316895	Juvenile bud stage	24.287
	SRR8316896	Juvenile bud stage	35.552
	SRR8316897	Juvenile bud stage	16.141
	SRR8316894	Third green stage	13.238
	SRR8316900	Third green stage	31.356
	SRR8316901	Third green stage	29.247
	SRR8316898	Complete white stage	11.822
	SRR8316899	Complete white stage	38.400
	SRR8316903	Complete white stage	24.277
	SRR8316902	Silver flowering stage	17.225
	SRR8316904	Silver flowering stage	23.783
	SRR8316905	Silver flowering stage	10.141
	SRR8316906	Gold flowering stage	29.221
	SRR8316907	Gold flowering stage	35.470
	SRR8316908	Gold flowering stage	35.268
SRP132670	SRR6706286	Control	15.536
	SRR6706287	Light intensity 50%	17.616
	SRR6706288	Light intensity 20%	16.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.777
	CNS0095593	Slightly white alabastrum(diploid) 2	25.357
	CNS0095594	Slightly white alabastrum(diploid) 3	29.612
	CNS0095595	Whole white alabastrum(diploid) 2	22.830
	CNS0095596	Whole white alabastrum(diploid) 3	19.894
	CNS0095597	Whole white alabastrum(diploid) 4	20.526
	CNS0095598	Silvery flower (diploied) 1	24.592
	CNS0095599	Silvery flower (diploied) 2	25.654
	CNS0095600	Silvery flower (diploied) 3	34.167
	CNS0095601	Golden flower (diploid) 1	25.276
	CNS0095602	Golden flower (diploid) 2	32.111
	CNS0095603	Golden flower (diploid) 3	30.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.757
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.642
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.627
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.775
	CNS0095610	Silvery flower (tetraploid) 1	25.774
	CNS0095611	Silvery flower (tetraploid) 2	28.012
	CNS0095612	Silvery flower (tetraploid) 3	24.251
	CNS0095613	Golden flower (tetraploid) 1	18.468
	CNS0095614	Golden flower (tetraploid) 2	28.230
	CNS0095615	Golden flower (tetraploid) 3	25.114
CRA001975	CRR073297	Stem 1	28.763
	CRR073298	Stem 2	23.842
	CRR073299	Stem 3	22.575
	CRR073300	Leaf 1	25.784
	CRR073301	Leaf 2	25.016
	CRR073302	Leaf 3	20.109
	CRR073303	Juvenile bud 1	19.631
	CRR073304	Juvenile bud 2	17.055
	CRR073305	Juvenile bud 3	21.666
	CRR073306	Third green 1	10.794
	CRR073307	Third green 2	11.970
	CRR073308	Third green 3	11.229
	CRR073309	Second white 1	9.203
	CRR073310	Second white 2	13.307
	CRR073311	Second white 3	11.539
	CRR073312	Silver flowering 1	10.494
	CRR073313	Silver flowering 2	8.093
	CRR073314	Silver flowering 3	12.138
	CRR073315	Gold flowering 1	13.325
	CRR073316	Gold flowering 2	15.801
	CRR073317	Gold flowering 3	10.370
	CRR073318	Tawny withering 1	22.824
	CRR073319	Tawny withering 2	22.269
	CRR073320	Tawny withering 3	18.568