Gene detail

Detail information of GWHGAAZE029920

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011004985.1	PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Populus euphratica]
COG	YP_721315.1	heavy metal translocating P-type ATPase
Swissprot	tr\|Q9SZC9\|HMA6_ARATH	Copper-transporting ATPase PAA1, chloroplastic (Precursor)
trEMBL	tr\|A0A067K6B3\|A0A067K6B3_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP27349.1}
TAIR10	AT4G33520.2	P-type ATP-ase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35323260	35338834	+
GWHAAZE00000009	mRNA	35323260	35338834	+
GWHAAZE00000009	exon	35323260	35323500	+
GWHAAZE00000009	exon	35323990	35324069	+
GWHAAZE00000009	exon	35324534	35324687	+
GWHAAZE00000009	exon	35324784	35324896	+
GWHAAZE00000009	exon	35326133	35326208	+
GWHAAZE00000009	exon	35327058	35327132	+
GWHAAZE00000009	exon	35327253	35327530	+
GWHAAZE00000009	exon	35329054	35329287	+
GWHAAZE00000009	exon	35329469	35329549	+
GWHAAZE00000009	exon	35329874	35330023	+
GWHAAZE00000009	exon	35330456	35330602	+
GWHAAZE00000009	exon	35333140	35333190	+
GWHAAZE00000009	exon	35333285	35333457	+
GWHAAZE00000009	exon	35334061	35334193	+
GWHAAZE00000009	exon	35335176	35335273	+
GWHAAZE00000009	exon	35336017	35336257	+
GWHAAZE00000009	exon	35337044	35337247	+
GWHAAZE00000009	exon	35338404	35338484	+
GWHAAZE00000009	exon	35338583	35338834	+
GWHAAZE00000009	CDS	35323260	35323500	+
GWHAAZE00000009	CDS	35323990	35324069	+
GWHAAZE00000009	CDS	35324534	35324687	+
GWHAAZE00000009	CDS	35324784	35324896	+
GWHAAZE00000009	CDS	35326133	35326208	+
GWHAAZE00000009	CDS	35327058	35327132	+
GWHAAZE00000009	CDS	35327253	35327530	+
GWHAAZE00000009	CDS	35329054	35329287	+
GWHAAZE00000009	CDS	35329469	35329549	+
GWHAAZE00000009	CDS	35329874	35330023	+
GWHAAZE00000009	CDS	35330456	35330602	+
GWHAAZE00000009	CDS	35333140	35333190	+
GWHAAZE00000009	CDS	35333285	35333457	+
GWHAAZE00000009	CDS	35334061	35334193	+
GWHAAZE00000009	CDS	35335176	35335273	+
GWHAAZE00000009	CDS	35336017	35336257	+
GWHAAZE00000009	CDS	35337044	35337247	+
GWHAAZE00000009	CDS	35338404	35338484	+
GWHAAZE00000009	CDS	35338583	35338834	+

Transcript Sequence
>GWHTAAZE029954 ATGGAATCCACATTATCTTCACTATCCAAAACCCTAACTCCCAGTTCCGGCTCCACCATCTTCCGAAGTTTCTCTCCGATTCGTCTGAGTCAATGCCGGCACCGGCAACTCTCGTCTCTCCAGCTCCGGCGGATGTTCGCTGGCGAGCTATGCAGCTCGAAGAAGCTAGGTTGTTGTGTCCCTAATTCGTCTATTTGGGGACTTTCTGCGGTGGTGCCTAGGGTTCGGACTCGGTTGCAGTGTTCTGATATATGTATTGCTCTGCAGGGCATGTCATGCGGGGGATGTGTAGCTAGTGTGAAGAGAATTTTAGAGAGTCAACCTCAAGTGGCTTCTGCCAGTGTCAATCTTACAACAGAGACAGCAGTTGTATGGCCTGTATCTGAAGCGAAGGTTGCACCAAATTGGCAAAAGATTGTGGGAGATGCACTTGCAAATCATTTGACTAATTGCGGGTTCAAATCTAACCTTCGAGTTTTCCTCATTTCTGGTGATGGTGAAGTTCTTGATTTGGGCATGTTTATACTGCATGATAAGGATGGAAACATTGGTGTAACTTTTAAATATCTACAGCTTGTTACATATATGGTCAGGGAGCTACTGAAGGAGATACTCCATCATAGAAATGCAAGGGTTCTTGTAAGAGCAACCATACTTCCTCATGACTCCGCAAAAGAGAATTTCTTTGAAGCTTTTGAAAGGAAGATGGATGAAAAGCGTAACCAGTTAAAAAAAAGCGGTCGGGAGCTTGCTGTCTCTTGGACATTATGTGCTATATGCCTCATTGGCCATCTCTCTCATTTCTTTGGAGCTAAGGCTTCATGGATCCATGCCCTTCATTCCACTGGATTCCACATGTCTTTGTCTTTGTTTACATTGCTCGGTCCTGGACGCCAACTGATTATTGATGGTTTAAAAAGCCTTATTAAAGGGGCTCCAAACATGAACACTTTAGTTGGTCTTGGGGCTATATCATCATTCACTGTCAGCTCATTGGCGGCCTTAATACCAAAACTGGGCTGGAAAGCATTCTTTGAGGAACCAGTTATGTTGATAGCATTTGTCTTGTTAGGAAGAAATCTTGAACAGAGAGCTAAAATTAAGGCCACCAGTGACATGACAGGCCTTCTTAGTCTTTTGCCATCTAAAGCTCGTCTTGTTGTCAATGGTGATCTAGAAGAGTCGAGTTCAACTGTTGAAGTTCCTTGTAGCAGTCTCTCTGTGGGGGATCAAATTGTTATATTACCCGGGGACCGCGTTCCAGCTGATGGGATTGTCAGAGCTGGTAGAAGCACAGTCGATGAGTCAAGTTTCACTGGAGAGCCTCTGCCCGCTGAAGTTGCAGCAGGAAGCATAAACCTAAACGGGACACTTACAGTTGAAGTAAGAAGACCAGGTGGTGAGACCTCCATGGGGGATATTGTTCGTTTGGTGGAAGCAGCACAGAGTAGAGAGGCTCCTGTACAGCGGTTGGCTGACAAGGTGGCTGGGCACTTCACTTATGGAGTAATGACACTCTCTGCAGTAACATTTATGTTCTGGAACCTTTTTGGTGCACGGATTCTACCAGCTACTATTCATCAAGGAAGTCCACTTTCATTGGCACTACAGCTCTCTTGTAGTGTTCTGGTCATTGCTTGTCCATGTGCGCTTGGTCTAGCAACACCTACTGCTGTGCTGGTTGGAACTTCGTTGGGTGCGACAAAAGGATTACTTTTGCGTGGTGGAAGTATCTTAGAGAAGTTTTCAATGGTGAACACAATTGTGTTTGACAAAACAGGGACATTGACAATCGGCAGACCTGTTGTCACAAAGGTGGTGACTCAAGTACATGAAAAAGAGAGAGATTCAAAACCTGGTTCAAATGGTAAATGGTCTGAAGTTGATCTTCTGAAATTAGCTGCTGGAGTTGAATCCAACACTATTCATCCAATTGGGAAAGCAATTGTGGAAGCTGCTCGTGCTGTTAACTGTCCTAATGTGAAGGTTGCGGATGGAACATTTGTGGAGGAACCTGGCTCTGGTGCAGTAGCAACTATTGAGAATAACAGGGTATCAGTTGGTACACTGGACTGGGTTCAAAGGCATGGAGTTGATGGGAATCCGTTTCTAGAAATGGATGAGTTTAAGAATCAATCAGTTGTCTATGTTGGAGTTGATGGTATTCTCGCCGGTGTTATTTATGTTGAGGATCAGATCAGAGAAGATGCTGCCAACGTCGTTAAATCTTTGTCTTCACAAGGAATAAATGTCTATTTGCTTTCTGGGGACAAAAAGAGTTCTGCTGAGTATGTTGCATCTGTTGTTGGTATTCCCAAGGAAAAGGTGTTTTATGGGGTGAAACCAGATGAAAAGGGGAAGTTTATAAGCAAACTTCAGAAGGATGAGAAGATAGTAGCAATGGTGGGTGATGGAATAAATGATGCTGCTGCCTTGGCTTCATCGCATGTAGGTATTGCAATGGGTGGAGGAGTTGGTGCTGCTAGCGAGGTTTCTTCTATTGTGCTCATGGGCAACAGGTTGTCCCAGTTGCTCGATGCTTTGGAACTTAGCAAACTAACCATGAAGACAGTCAAGCAAAATCTTTGGTGGGCCTTCGCATACAACATTGTTGGAATCCCAATAGCTGCTGGAACGCTGCTGCCGGTGACGGGGACTATGCTTACTCCGTCAATTGCTGGAGCACTCATGGGCTTGAGCTCTATTGGTGTGATGACAAATTCATTACTTCTGAGGTTGAGATTTATATCCAAGCAGAATCAAATTTCTGGGGCATTATTGCGAAAGAGGGAAACCCACTCGGACTGGGAAGCTACTGACCAAGATGACAAGTTGAAGCACCCACATACATCCATTAGGTGA

Network for GWHGAAZE029920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00403.27	HMA	88	130	5.60E-09
PF00122.21	E1-E2_ATPase	379	568	1.50E-39
PF00702.27	Hydrolase	585	814	1.30E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17686	copA, ctpA, ATP7	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0006812	biological_process	cation transport
GO:0016021	cellular_component	integral component of membrane
GO:0046872	molecular_function	metal ion binding
GO:0019829	molecular_function	ATPase-coupled cation transmembrane transporter activity
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.835
	SRR3591706	second leaf	27.899
	SRR3591707	mature leaf	27.571
	SRR3591708	Shoot apex	24.418
	SRR3591709	Stem	11.062
	SRR3591710	White floral bud	44.670
	SRR3591711	White flower	25.566
	SRR3591712	Green floral bud	36.724
	SRR3591713	Yellow flower	20.415
SRP173429	SRR8316895	Juvenile bud stage	14.530
	SRR8316896	Juvenile bud stage	17.314
	SRR8316897	Juvenile bud stage	8.534
	SRR8316894	Third green stage	6.367
	SRR8316900	Third green stage	23.732
	SRR8316901	Third green stage	23.325
	SRR8316898	Complete white stage	9.209
	SRR8316899	Complete white stage	34.796
	SRR8316903	Complete white stage	18.202
	SRR8316902	Silver flowering stage	10.150
	SRR8316904	Silver flowering stage	11.719
	SRR8316905	Silver flowering stage	7.497
	SRR8316906	Gold flowering stage	27.596
	SRR8316907	Gold flowering stage	28.706
	SRR8316908	Gold flowering stage	29.343
SRP132670	SRR6706286	Control	18.431
	SRR6706287	Light intensity 50%	19.167
	SRR6706288	Light intensity 20%	21.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.382
	CNS0095593	Slightly white alabastrum(diploid) 2	9.645
	CNS0095594	Slightly white alabastrum(diploid) 3	12.134
	CNS0095595	Whole white alabastrum(diploid) 2	10.088
	CNS0095596	Whole white alabastrum(diploid) 3	10.344
	CNS0095597	Whole white alabastrum(diploid) 4	12.058
	CNS0095598	Silvery flower (diploied) 1	17.085
	CNS0095599	Silvery flower (diploied) 2	16.265
	CNS0095600	Silvery flower (diploied) 3	15.341
	CNS0095601	Golden flower (diploid) 1	13.733
	CNS0095602	Golden flower (diploid) 2	14.061
	CNS0095603	Golden flower (diploid) 3	13.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.805
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.185
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.323
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.713
	CNS0095610	Silvery flower (tetraploid) 1	15.998
	CNS0095611	Silvery flower (tetraploid) 2	15.703
	CNS0095612	Silvery flower (tetraploid) 3	13.621
	CNS0095613	Golden flower (tetraploid) 1	9.254
	CNS0095614	Golden flower (tetraploid) 2	15.941
	CNS0095615	Golden flower (tetraploid) 3	8.079
CRA001975	CRR073297	Stem 1	21.587
	CRR073298	Stem 2	19.353
	CRR073299	Stem 3	20.575
	CRR073300	Leaf 1	21.394
	CRR073301	Leaf 2	17.154
	CRR073302	Leaf 3	17.391
	CRR073303	Juvenile bud 1	15.353
	CRR073304	Juvenile bud 2	27.671
	CRR073305	Juvenile bud 3	12.744
	CRR073306	Third green 1	7.861
	CRR073307	Third green 2	5.483
	CRR073308	Third green 3	6.051
	CRR073309	Second white 1	6.967
	CRR073310	Second white 2	6.204
	CRR073311	Second white 3	7.348
	CRR073312	Silver flowering 1	6.983
	CRR073313	Silver flowering 2	5.593
	CRR073314	Silver flowering 3	6.116
	CRR073315	Gold flowering 1	12.066
	CRR073316	Gold flowering 2	17.970
	CRR073317	Gold flowering 3	12.522
	CRR073318	Tawny withering 1	8.069
	CRR073319	Tawny withering 2	17.498
	CRR073320	Tawny withering 3	4.860