Gene detail

Detail information of GWHGAAZE029923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264923.1	0	PREDICTED: uncharacterized protein LOC100257088 isoform X2 [Vitis vinifera]
trEMBL	tr\|F6HJL9\|F6HJL9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52769.1}
TAIR10	AT5G64170.2	5E-63	dentin sialophosphoprotein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35388353	35393261	+
GWHAAZE00000009	mRNA	35388353	35393261	+
GWHAAZE00000009	exon	35388353	35388400	+
GWHAAZE00000009	exon	35389381	35389970	+
GWHAAZE00000009	exon	35390068	35390419	+
GWHAAZE00000009	exon	35391013	35391618	+
GWHAAZE00000009	exon	35392111	35392247	+
GWHAAZE00000009	exon	35392665	35392806	+
GWHAAZE00000009	exon	35392917	35393261	+
GWHAAZE00000009	CDS	35388353	35388400	+
GWHAAZE00000009	CDS	35389381	35389970	+
GWHAAZE00000009	CDS	35390068	35390419	+
GWHAAZE00000009	CDS	35391013	35391618	+
GWHAAZE00000009	CDS	35392111	35392247	+
GWHAAZE00000009	CDS	35392665	35392806	+
GWHAAZE00000009	CDS	35392917	35393015	+
GWHAAZE00000009	three_prime_UTR	35393016	35393261	+

Transcript Sequence
>GWHTAAZE029957 ATGAAGGGAAAGGAGGAATTTTGTGTTAAAGATGACAGCAGATCAGAGCTTGATGACATAGTCTGGGATGAATTTGGTCAAGGCGACGATCATATAGTGCCTCATCCTAGTGGAGAACATGACAATGGCCACGTGTTTAATGGTGACAGCTTTAAGAAACCTCGGCATGAAGTAATCGATGTTAAAAGTAATGCCAATGATCATTGTGCTGCTAAATTTGTTAGTCAAGAAAAGGAGCCGGGAGACTTTCGAACCATAAATAAAAGAAGGAACGCAATGTTGGAAAAGGATCAGTGGTCTGACATACCTGAGAATATGTTATCTGCTTCGTGCGATGGTGATCCTATGGAAGAAGTGGCAAGTTTAGCATCCAATAATAATAGGATTCCAAGTTATTGCTTCAAAAGCAGCAATACAAACTCAACTGACAGCAAATTATGTGCTGGTGATCCCATCCTCAGTGACAGGGGCACTGCAGTTGATAATAACTCATATAGCTTTTCGCCAAGTCAGATTTCTCAGACAAACAATGATACCAGCCTATTTAACAACGATTGTGAGGACAAAGAATCCAATGATCTCATATATTATAGTTGGCCAGATATAGGAAATTTTGAGGATGTTGACAAAATGTTTAGAAGTTGTGATTCATCATTTCAGCTTGGGGTTGCTGGTGATCAAGATGACCTAGGCTGGTTTTCATCATCAGAAGCTATTGAAGGATCTGAAGATGCAGTGAAATCCAACTTTAAGTTTTCATGTCCCGAGTCAAATGCATTAAAAGGCATATCAGAAAACCCTGAACCTTCAAAGCTGTATAATGAACGTTTTCCAATCAATGACTCCAGGATGAAAAGTGCAGTGGCTAGCTATAAAGCCAGTTGTCAACCTTTGGACGTTGATGAACCAGCCACAGTCGGTCACTCATTTCTCGTGAATGGGTCCGATCAGACTTCTGAAGGCAAGGACAACTCTATAAACAACGAAAAGATCTATATGTATAACAAGCAGCCAAACCACCAGAATCAAATTGAAAGAGAAATAGAAGACCCATGTTTGGAAGACGGTAGTTTTGACTCCAGAGGATTACGGTTGAAAAATGAAAACTTGCGACCTAATTCCTCTGATTACATTCAGACTAATATTCCTTATATGCATTCAGACTATTCCCTTCCCTTGGATCAAACTACAGTCAGTCCTACATTATCTGGTTTCACTTCAGAAAATAGTGGTCCTACTTCACTTTCCCCAAAGAGTTATTCTCATGATCCTTTGTTTGAGGCAACAACTATCAAACTTGATGACAAGAGAAAAAAGCAACATGCTCGACGAGGATTCCAGCACCCCTTTACTAGCAACCCAAAACACGTCGATTCAGTGCTTCAATCTTCAATCTGTGATCCAGTTTCAGTTCAGAAGGAAATCCAGCATTGTGGAAATAAATTTCAGAATCGGAGTGATGTTGGAGTTGGTGTAGGAAGTCAGGCAGAATTATGTTCTCCAAATGCGCAGGAAAGCTCTTCCATGAATTCTAGGCCAGACGAAATATCGCTAGAAGCAACTAGTTTCAGCCATCTTCAACAAGTCATGGAACAGTTGGACTTGAGGACAAAACTATGCATAAGGAATAGCCTGTTCCGTTTGGCTAGGAGTGCTGAACAACGACATAACAATGCGAATCTGAATGGCAGCAGTGATAGCAGTGGCGCATTTATAGCTGCAGGAACAAATAAGTGCACTGGATTTATGGATATGGAAACTGATACAAACCCTATAGATCGGTCTATAGCACACTTACTGTTTCACAGGCCCTTGGACTCCTCCACAGTGCCCACTCTTAATGTTTCACCTCTAAAGTCGCATCTGCATAGCTCAGTTCATGGGTCTATGACTAGTATGCCAGTGATGGGTCAAAAACTAGACTGTCATGAAGAGTCAGCCATTGAAACAGATAAAAAGGCTGCTGATCAGTGACCACTGGTGATAATCTATAAAAGGAATTTTTACCCCAAGCGCAGTTGTAATTAAAGGTAATCTTCTTGTCTGTGAATGCTCGTATGTATAAAGAGCGTTCAAGAGGTGCCAACATAGATGCCTAGTTTATTCTTTTTTTATGTTGGTGTGTATATCCTTTATACCAATTTCACGATAGCCTATTTGTTTGCGCTATGCAAATTCTAAATTTTCAAAGCGGTTCACATTATATTCGTAGTGGCATTA

Network for GWHGAAZE029923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0156

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.520
	SRR3591706	second leaf	80.247
	SRR3591707	mature leaf	151.072
	SRR3591708	Shoot apex	60.348
	SRR3591709	Stem	64.569
	SRR3591710	White floral bud	45.454
	SRR3591711	White flower	65.443
	SRR3591712	Green floral bud	48.743
	SRR3591713	Yellow flower	48.001
SRP173429	SRR8316895	Juvenile bud stage	36.876
	SRR8316896	Juvenile bud stage	43.204
	SRR8316897	Juvenile bud stage	20.797
	SRR8316894	Third green stage	22.590
	SRR8316900	Third green stage	51.459
	SRR8316901	Third green stage	47.951
	SRR8316898	Complete white stage	26.055
	SRR8316899	Complete white stage	86.962
	SRR8316903	Complete white stage	41.689
	SRR8316902	Silver flowering stage	26.348
	SRR8316904	Silver flowering stage	37.845
	SRR8316905	Silver flowering stage	15.108
	SRR8316906	Gold flowering stage	69.708
	SRR8316907	Gold flowering stage	57.599
	SRR8316908	Gold flowering stage	65.192
SRP132670	SRR6706286	Control	50.278
	SRR6706287	Light intensity 50%	52.299
	SRR6706288	Light intensity 20%	52.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.344
	CNS0095593	Slightly white alabastrum(diploid) 2	30.689
	CNS0095594	Slightly white alabastrum(diploid) 3	30.251
	CNS0095595	Whole white alabastrum(diploid) 2	22.998
	CNS0095596	Whole white alabastrum(diploid) 3	22.882
	CNS0095597	Whole white alabastrum(diploid) 4	25.051
	CNS0095598	Silvery flower (diploied) 1	33.652
	CNS0095599	Silvery flower (diploied) 2	37.490
	CNS0095600	Silvery flower (diploied) 3	54.020
	CNS0095601	Golden flower (diploid) 1	43.368
	CNS0095602	Golden flower (diploid) 2	62.668
	CNS0095603	Golden flower (diploid) 3	58.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.345
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.533
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.352
	CNS0095610	Silvery flower (tetraploid) 1	41.299
	CNS0095611	Silvery flower (tetraploid) 2	36.431
	CNS0095612	Silvery flower (tetraploid) 3	1.287
	CNS0095613	Golden flower (tetraploid) 1	14.678
	CNS0095614	Golden flower (tetraploid) 2	34.013
	CNS0095615	Golden flower (tetraploid) 3	86.494
CRA001975	CRR073297	Stem 1	8.146
	CRR073298	Stem 2	6.921
	CRR073299	Stem 3	5.567
	CRR073300	Leaf 1	8.543
	CRR073301	Leaf 2	9.836
	CRR073302	Leaf 3	7.127
	CRR073303	Juvenile bud 1	11.455
	CRR073304	Juvenile bud 2	5.511
	CRR073305	Juvenile bud 3	11.571
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.300
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.191
	CRR073311	Second white 3	0.357
	CRR073312	Silver flowering 1	0.081
	CRR073313	Silver flowering 2	0.048
	CRR073314	Silver flowering 3	0.201
	CRR073315	Gold flowering 1	1.184
	CRR073316	Gold flowering 2	2.762
	CRR073317	Gold flowering 3	2.001
	CRR073318	Tawny withering 1	2.258
	CRR073319	Tawny withering 2	0.789
	CRR073320	Tawny withering 3	1.774