Gene detail

Detail information of GWHGAAZE029935

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042450.1	0	PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
COG	YP_001869900.1	7E-22	glycoside hydrolase family protein
Swissprot	tr\|Q93XX5\|Y5713_ARATH	5E-128	PI-PLC X domain-containing protein At5g67130 (Precursor)
trEMBL	tr\|A0A061E1S7\|A0A061E1S7_THECC	0	PLC-like phosphodiesterases superfamily protein {ECO:0000313\|EMBL:EOX98281.1}
TAIR10	AT1G49740.1	5E-141	PLC-like phosphodiesterases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35578675	35582780	-
GWHAAZE00000009	mRNA	35578675	35582780	-
GWHAAZE00000009	exon	35582658	35582780	-
GWHAAZE00000009	exon	35582491	35582574	-
GWHAAZE00000009	exon	35582256	35582378	-
GWHAAZE00000009	exon	35581778	35581915	-
GWHAAZE00000009	exon	35580087	35580185	-
GWHAAZE00000009	exon	35579409	35579712	-
GWHAAZE00000009	exon	35578675	35578916	-
GWHAAZE00000009	five_prime_UTR	35582673	35582780	-
GWHAAZE00000009	CDS	35582658	35582672	-
GWHAAZE00000009	CDS	35582491	35582574	-
GWHAAZE00000009	CDS	35582256	35582378	-
GWHAAZE00000009	CDS	35581778	35581915	-
GWHAAZE00000009	CDS	35580087	35580185	-
GWHAAZE00000009	CDS	35579409	35579712	-
GWHAAZE00000009	CDS	35578675	35578916	-

Transcript Sequence
>GWHTAAZE029969 AGAAAAACAGAGAAAGTTATGGTGAATGAATGAATTCACAGAGAGAAAGTACACACGTCTTTAATTCCCCTTTCCTCTTTCACTCTTCGTAACCACAAAAATTCAGTAATGGTCCCAATAGAGAGAAATCTCAAATTCAGGATGAAACTGTGCATTGCAACTCTGTTTGTAGCGAATTTTCTGTTCTGTTACTGTTCAGCTCTCAAGGAAGGACAAACTTGTGTTGCAGACCGAAACTGTGATGCAGGCTTACACTGCGAAACTTGCGTCGCAAACGGCAATGTTCGGCCCCGTTGTACTCGAATTCAACCTCTCAATCCAACTTCAAAGGTTAAGGGACTGCCTTTTAATCGTTACTCGTGGCTAACAACGCACAATGCGTTCGCTAGACTCTTGGAGAGGTCAGCGACGGGGTCTGTAATTTTAGCTCCGACGAACCAGCAGGACTCAATTACCAGTCAACTCAATAATGGTGTTAGAGGGTTGATGCTTGATATGTACGATTTCAACAATGACATCTGGTTATGTCACTCCTTTGGTGGCCAATGCTACAACTACACCGCTTTTCAACCTGCCATCAACTTGTTGAAAGAAATCCAAGTATTTCTGGAAGCAAACCCTTCAGAAATTGTCACCATTATCATTGAAGACTATGTTACATCTCCAAACGGTCTAACCAAGGTGTTTGATGCTGCTGGCCTGAGAAAATTCTGGTTTCCAGTATCTCAAATGCCTAAAAATGGTCAAGATTGGCCCACAGTTGATGATATGGCTGCACGAAATCAGCGTTTAGTGGTTTTTACTTCAAAATCTTCCAAGGAGTCGTCTGAAGGCATTGCTTATGAGTGGAGATACGTAGTAGAAAATCAATATGGTAATGGGGGAATGAAACCTGGCTCATGCCCCAACCGCGCAGAATCCTCTCCCATGAACACGAAATCAAGGTCGCTAGTCCTAATGAACTACTTCCCAGATAACCCAGATGTAACCCAAGCCTGCAGGCACAATTCGGCTCCTTTAATTAGCATGATCAACACTTGCCATGACGCAGCAGGCAAACGTTGGCCTAACTTCATTGCTGTTGATTTCTACAAGGTATTGATGATCTTATAA

Network for GWHGAAZE029935

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0251

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.566
	SRR3591706	second leaf	16.201
	SRR3591707	mature leaf	7.067
	SRR3591708	Shoot apex	26.095
	SRR3591709	Stem	4.210
	SRR3591710	White floral bud	5.524
	SRR3591711	White flower	6.330
	SRR3591712	Green floral bud	13.897
	SRR3591713	Yellow flower	10.875
SRP173429	SRR8316895	Juvenile bud stage	10.235
	SRR8316896	Juvenile bud stage	8.681
	SRR8316897	Juvenile bud stage	2.743
	SRR8316894	Third green stage	3.965
	SRR8316900	Third green stage	8.269
	SRR8316901	Third green stage	7.081
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	4.172
	SRR8316903	Complete white stage	0.874
	SRR8316902	Silver flowering stage	0.661
	SRR8316904	Silver flowering stage	0.460
	SRR8316905	Silver flowering stage	0.217
	SRR8316906	Gold flowering stage	2.055
	SRR8316907	Gold flowering stage	1.554
	SRR8316908	Gold flowering stage	1.085
SRP132670	SRR6706286	Control	15.667
	SRR6706287	Light intensity 50%	14.420
	SRR6706288	Light intensity 20%	16.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.035
	CNS0095593	Slightly white alabastrum(diploid) 2	6.771
	CNS0095594	Slightly white alabastrum(diploid) 3	3.629
	CNS0095595	Whole white alabastrum(diploid) 2	4.363
	CNS0095596	Whole white alabastrum(diploid) 3	3.786
	CNS0095597	Whole white alabastrum(diploid) 4	4.210
	CNS0095598	Silvery flower (diploied) 1	7.670
	CNS0095599	Silvery flower (diploied) 2	8.135
	CNS0095600	Silvery flower (diploied) 3	4.349
	CNS0095601	Golden flower (diploid) 1	5.442
	CNS0095602	Golden flower (diploid) 2	10.748
	CNS0095603	Golden flower (diploid) 3	9.634
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.502
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.287
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.247
	CNS0095610	Silvery flower (tetraploid) 1	3.044
	CNS0095611	Silvery flower (tetraploid) 2	2.330
	CNS0095612	Silvery flower (tetraploid) 3	1.206
	CNS0095613	Golden flower (tetraploid) 1	1.834
	CNS0095614	Golden flower (tetraploid) 2	2.097
	CNS0095615	Golden flower (tetraploid) 3	1.567
CRA001975	CRR073297	Stem 1	13.558
	CRR073298	Stem 2	12.169
	CRR073299	Stem 3	16.265
	CRR073300	Leaf 1	12.041
	CRR073301	Leaf 2	10.497
	CRR073302	Leaf 3	13.935
	CRR073303	Juvenile bud 1	7.578
	CRR073304	Juvenile bud 2	4.495
	CRR073305	Juvenile bud 3	8.420
	CRR073306	Third green 1	0.251
	CRR073307	Third green 2	0.612
	CRR073308	Third green 3	0.089
	CRR073309	Second white 1	0.383
	CRR073310	Second white 2	0.405
	CRR073311	Second white 3	0.287
	CRR073312	Silver flowering 1	0.358
	CRR073313	Silver flowering 2	0.261
	CRR073314	Silver flowering 3	0.849
	CRR073315	Gold flowering 1	2.274
	CRR073316	Gold flowering 2	4.682
	CRR073317	Gold flowering 3	3.196
	CRR073318	Tawny withering 1	2.294
	CRR073319	Tawny withering 2	1.476
	CRR073320	Tawny withering 3	1.449