Gene detail

Detail information of GWHGAAZE029937

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010270536.1	0	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Nelumbo nucifera]
COG	YP_005007227.1	2E-12	RNP-1 like RNA-binding protein
Swissprot	tr\|P42731\|PABP2_ARATH	0	Polyadenylate-binding protein 2
trEMBL	tr\|K4B303\|K4B303_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g107870.2.1}
TAIR10	AT4G34110.1	0	poly(A) binding protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35647553	35655718	+
GWHAAZE00000009	mRNA	35647553	35655718	+
GWHAAZE00000009	exon	35647553	35647781	+
GWHAAZE00000009	exon	35651200	35651282	+
GWHAAZE00000009	exon	35651859	35652515	+
GWHAAZE00000009	exon	35652614	35652691	+
GWHAAZE00000009	exon	35652767	35652856	+
GWHAAZE00000009	exon	35653041	35653178	+
GWHAAZE00000009	exon	35653490	35653663	+
GWHAAZE00000009	exon	35654224	35654403	+
GWHAAZE00000009	exon	35655458	35655718	+
GWHAAZE00000009	CDS	35647553	35647781	+
GWHAAZE00000009	CDS	35651200	35651282	+
GWHAAZE00000009	CDS	35651859	35652515	+
GWHAAZE00000009	CDS	35652614	35652691	+
GWHAAZE00000009	CDS	35652767	35652856	+
GWHAAZE00000009	CDS	35653041	35653178	+
GWHAAZE00000009	CDS	35653490	35653663	+
GWHAAZE00000009	CDS	35654224	35654403	+
GWHAAZE00000009	CDS	35655458	35655718	+

Transcript Sequence
>GWHTAAZE029971 ATGGCGCAGGTTCAACAAGCTCAACAGCCTCAGGCGGTGAATGGAGGCGGGAATCAGTTTGTGCCGACGTCACTGTATGTCGGTGACCTCGAGTGGAGTGTGACTGATTCGCAGCTTTATGATCTGTTTAACCAGCTAGGTCAGGTGGTTTCGGTTAGGGTTTGTAGGGATTTGTCTACTCGGAGGTCACTTGGCTATGGTTATGTCAACTATGCCAATCCGCAAGATGCTGCGAGGGCAATGGAGGTGCTGAACTTTACTCCTGTTAATGGAAAATCCATTAGGATAATGTATTCTCATCGGGACCCTAGTAATTTGGACAAGGCAATTGACCACAAAGCTCTGCATGACACATTTTCTGCATTTGGGAATATTCTCTCCTGCAAGATAGCTACAGACAACTCTGGTGAGTCAAAGGGCTATGGTTTTGTTCAATACGAGAGCGAGGAAGCTGCCCAAACAGCTATTGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTATACGTTGGACCCTTTCTTCGCAAACAGGAAAGAGAAATGGCTGTTGACAAGACAAAATTTACTAACGTATATGTAAAGAATCTATCCGAATCAACCACAGAAGAGGATTTAAAAAAAGCGTTTGGTGAATTTGGACCAATCACTAGTGTCGTCGTAATGAGGGATGGGGATGGAAAGTCTAAGTGCTTCGGATTTGTCAACTTCGAGGATGTGGAAGATGCTGCTAGATCTGTTGAGGCTCTTAATGGACAAAAGTTTGATCAGAAGGAATGGTATGTTGGGAAAGCCCAGAAAAAATCTGAGAGGGAACAAGCATTAAAAGGTCAATTCGAGCAGACTGTGAAGGAGGCAGTGGACAAATCACAAGGGCTGAACTTGTACATCAAAAATCTAGAAGATACCATTGGTGATGATAAGTTAATGGAAATGTTCTCTCAATTTGGTACAATAACTTCATGCAAGGTTATGCGAGATCCTAATGGAACGAGTAAAGGGTCGGGTTTTGTTGCATTTTCAACTCCTGAGGAGGCTTCTAAAGCTCTGTCAGAGATGAATGGCAAGATGGTTGCTAACAAACCACTTTATGTCGCACTTGCACAGCGTAAAGAAGATAGAAGGGCAAGATTGCAGGCACAATTTTCTCAGATGCGACCAATTGCAATGGCATCTTCTGTCCCTCCTCGTATGCCAATGTTCCCTCCTGGAGGTCCAGGCCTAGGGCAACAAGTATTCTATGGACAAGCCCCTCCTGCTTTCATTCCTCCCCAACCTGGCTTTGGGTATCAGCAGCAACTCGTTCCAGGTATGAGGCCTGGTGGGGCCCCAATGCAGAACTTTTTTGTTCCAATGGGTGCTCAGCAAGGGCAGCATCCAGGTGGCCGACGTTCAGGAGCTGTGCCTGGGCAGCAGGGCCAACAGCCTGTCCCACTAATGCAGCATCAGATGCTTCCAAGGGGTCGCGTGTATCGTTACCCTCCAGGTCGTGGGCTCCCAGATGTTTCCATGCCAGGTATGGGCGGAGGCATGCAGTTGCGTGGGGATGCAGGCGGCATGTCTAAGCCAATTCCAATTGGAGCTTTGGCTTCTGCCCTTGCAAATTCTACACCTGCGGAGCAGCGAACGATGCTTGGTGAAAACTTGTACCCACTAGTGGAGCAGCTGGAAGGTGAAGCAGCGGCCAAGGTGACGGGTATGCTTCTGGAAATGGATCAGACGGAGGTGCTGCACTTGCTGGAGTCCCCTGAAGCTCTTAAAGCTAAAGTAGCCGAGGCTATGGAGGTCCTCAGGAATGTCAGTCAGCAGCAGCAGGCAGCCAGTAATTCCCCTTCTGCTGCTGATCAATTGGCCGCATTGTCGTTGAGCGATGATGGCCTTGTTTCTTAA

Network for GWHGAAZE029937

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	25	95	9.20E-19
PF00076.23	RRM_1	104	169	3.30E-18
PF00076.23	RRM_1	192	260	2.70E-24
PF00076.23	RRM_1	295	363	6.40E-20
PF00658.19	PABP	531	597	1.20E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	254.559
	SRR3591706	second leaf	169.570
	SRR3591707	mature leaf	127.579
	SRR3591708	Shoot apex	403.954
	SRR3591709	Stem	173.421
	SRR3591710	White floral bud	146.840
	SRR3591711	White flower	166.202
	SRR3591712	Green floral bud	196.957
	SRR3591713	Yellow flower	130.680
SRP173429	SRR8316895	Juvenile bud stage	105.361
	SRR8316896	Juvenile bud stage	132.505
	SRR8316897	Juvenile bud stage	103.709
	SRR8316894	Third green stage	52.433
	SRR8316900	Third green stage	119.370
	SRR8316901	Third green stage	120.201
	SRR8316898	Complete white stage	37.192
	SRR8316899	Complete white stage	125.471
	SRR8316903	Complete white stage	55.276
	SRR8316902	Silver flowering stage	37.542
	SRR8316904	Silver flowering stage	48.714
	SRR8316905	Silver flowering stage	20.986
	SRR8316906	Gold flowering stage	78.898
	SRR8316907	Gold flowering stage	82.557
	SRR8316908	Gold flowering stage	117.571
SRP132670	SRR6706286	Control	59.437
	SRR6706287	Light intensity 50%	61.475
	SRR6706288	Light intensity 20%	63.189
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	124.547
	CNS0095593	Slightly white alabastrum(diploid) 2	118.332
	CNS0095594	Slightly white alabastrum(diploid) 3	109.089
	CNS0095595	Whole white alabastrum(diploid) 2	88.166
	CNS0095596	Whole white alabastrum(diploid) 3	102.003
	CNS0095597	Whole white alabastrum(diploid) 4	77.919
	CNS0095598	Silvery flower (diploied) 1	120.107
	CNS0095599	Silvery flower (diploied) 2	95.895
	CNS0095600	Silvery flower (diploied) 3	95.674
	CNS0095601	Golden flower (diploid) 1	106.922
	CNS0095602	Golden flower (diploid) 2	112.899
	CNS0095603	Golden flower (diploid) 3	109.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	222.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	210.451
	CNS0095606	Slightly white alabastrum(tetraploid) 3	294.418
	CNS0095607	Whole white alabastrum(tetraploid) 1	133.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	101.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	195.110
	CNS0095610	Silvery flower (tetraploid) 1	150.851
	CNS0095611	Silvery flower (tetraploid) 2	147.807
	CNS0095612	Silvery flower (tetraploid) 3	119.360
	CNS0095613	Golden flower (tetraploid) 1	107.590
	CNS0095614	Golden flower (tetraploid) 2	145.345
	CNS0095615	Golden flower (tetraploid) 3	130.532
CRA001975	CRR073297	Stem 1	138.754
	CRR073298	Stem 2	127.668
	CRR073299	Stem 3	127.934
	CRR073300	Leaf 1	108.761
	CRR073301	Leaf 2	96.676
	CRR073302	Leaf 3	99.742
	CRR073303	Juvenile bud 1	75.676
	CRR073304	Juvenile bud 2	56.649
	CRR073305	Juvenile bud 3	77.779
	CRR073306	Third green 1	37.158
	CRR073307	Third green 2	33.425
	CRR073308	Third green 3	34.030
	CRR073309	Second white 1	35.224
	CRR073310	Second white 2	40.475
	CRR073311	Second white 3	34.354
	CRR073312	Silver flowering 1	42.855
	CRR073313	Silver flowering 2	41.619
	CRR073314	Silver flowering 3	38.505
	CRR073315	Gold flowering 1	39.865
	CRR073316	Gold flowering 2	68.712
	CRR073317	Gold flowering 3	44.273
	CRR073318	Tawny withering 1	86.098
	CRR073319	Tawny withering 2	69.458
	CRR073320	Tawny withering 3	88.080