Gene detail

Detail information of GWHGAAZE029945

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG16691.1	0	hypothetical protein F383_20820 [Gossypium arboreum]
COG	YP_001869900.1	7E-22	glycoside hydrolase family protein
Swissprot	tr\|Q93XX5\|Y5713_ARATH	2E-139	PI-PLC X domain-containing protein At5g67130 (Precursor)
trEMBL	tr\|D7TPG8\|D7TPG8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32391.3}
TAIR10	AT1G49740.1	3E-157	PLC-like phosphodiesterases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	35733435	35737997	-
GWHAAZE00000009	mRNA	35733435	35737997	-
GWHAAZE00000009	exon	35737875	35737997	-
GWHAAZE00000009	exon	35737687	35737770	-
GWHAAZE00000009	exon	35737451	35737573	-
GWHAAZE00000009	exon	35736747	35736884	-
GWHAAZE00000009	exon	35735034	35735132	-
GWHAAZE00000009	exon	35734356	35734659	-
GWHAAZE00000009	exon	35733642	35733865	-
GWHAAZE00000009	exon	35733435	35733539	-
GWHAAZE00000009	five_prime_UTR	35737890	35737997	-
GWHAAZE00000009	CDS	35737875	35737889	-
GWHAAZE00000009	CDS	35737687	35737770	-
GWHAAZE00000009	CDS	35737451	35737573	-
GWHAAZE00000009	CDS	35736747	35736884	-
GWHAAZE00000009	CDS	35735034	35735132	-
GWHAAZE00000009	CDS	35734356	35734659	-
GWHAAZE00000009	CDS	35733642	35733865	-
GWHAAZE00000009	CDS	35733435	35733539	-

Transcript Sequence
>GWHTAAZE029979 AGAAAAACAGAGAAAGTTATGGTGAATGAATGAATTTACAGAGAGAAAGTACACACGTCTTTAATTCCCCTTTCCTCTTTCACTCTTCGTAACCACAAAAATTCAGTAATGGTCCCAATAGAGAGAAATCTCAAATTCAGGATGAAACTGTGCATTGCAACTCTGCTTGTAGCGAATTTTCTGTTCAGTTACTGTTCAGCTCTCAAGGAAGGACAAACTTGTGTTGCAGACCGAAACTGTGATGCAGGCTTACACTGCGAAACTTGCGTCGCAAACGGCAATGTTCGGCCCCGTTGTACTCGAATTCAACCTCTCAATCCAACTTCAAAGGTTAAGGGACTGCCTTTTAATCGTTACTCGTGGCTAACAACGCACAATGCGTTCGCTAGACTCTTGGAGAGGTCAGCGACGGGGTCTGTAATTTTAGCTCCGACGAACCAGCAGGACTCAATTACCAGTCAACTCAATAATGGTGTTAGAGGGTTGATGCTTGATATGTACGATTTCAACAATGACATCTGGTTATGTCACTCCTTTGGTGGCCAATGCTACAACTACACCGCTTTTCAACCTGCCATCAACTTGTTGAAAGAAATCCAAGTATTTCTGGAAGCAAACCCTTCAGAAATTGTCACCATTATCATTGAAGACTATGTTACATCTCCAAACGGTCTAACCAAGGTGTTTGATGCTGCTGGCCTGAGAAAATTCTGGTTTCCAGTATCTCGAATGCCTAAAAATGGTCAAGATTGGCCCACAGTTGATGATATGGCTGCACGAAATCAGCGTTTAGTGGTTTTTACTTCTAAATCTTCCAAGGAGTCGTCTGAAGGCATTGCTTATGAGTGGAGATACGTAGTAGAAAATCAATATGGTAATGGGGGAATGAAACCTGGCTCATGCCCCAACCGCGCAGAATCCTCTCCCATGAACACGAAATCAAGGTCGCTAGTCCTAATGAACTACTTCCCAGATAACCCAGATGTAACCCAAGCCTGCAGGCACAATTCGGCTCCTTTAATTAGCATGATCAACACTTGCCATGACGCAGCAGGCAAACGTTGGCCTAACTTCATTGCTGTTGATTTCTACAAGAGGAGCGATGGAGGGGGCGCCCCCCAAGCTGTGGATATGACAAATGGTAACTTGGTGTGTGGATGTACTAACATTGCATATTGCAAGGTTTGCAGCAAATTCTAA

Network for GWHGAAZE029945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0251

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.739
	SRR3591706	second leaf	20.741
	SRR3591707	mature leaf	10.019
	SRR3591708	Shoot apex	28.399
	SRR3591709	Stem	4.961
	SRR3591710	White floral bud	6.938
	SRR3591711	White flower	7.699
	SRR3591712	Green floral bud	12.697
	SRR3591713	Yellow flower	9.097
SRP173429	SRR8316895	Juvenile bud stage	13.537
	SRR8316896	Juvenile bud stage	11.814
	SRR8316897	Juvenile bud stage	9.914
	SRR8316894	Third green stage	4.970
	SRR8316900	Third green stage	11.527
	SRR8316901	Third green stage	11.043
	SRR8316898	Complete white stage	0.844
	SRR8316899	Complete white stage	7.852
	SRR8316903	Complete white stage	1.219
	SRR8316902	Silver flowering stage	0.623
	SRR8316904	Silver flowering stage	1.099
	SRR8316905	Silver flowering stage	0.495
	SRR8316906	Gold flowering stage	2.792
	SRR8316907	Gold flowering stage	4.365
	SRR8316908	Gold flowering stage	3.374
SRP132670	SRR6706286	Control	16.688
	SRR6706287	Light intensity 50%	16.662
	SRR6706288	Light intensity 20%	18.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.798
	CNS0095593	Slightly white alabastrum(diploid) 2	9.116
	CNS0095594	Slightly white alabastrum(diploid) 3	6.797
	CNS0095595	Whole white alabastrum(diploid) 2	6.043
	CNS0095596	Whole white alabastrum(diploid) 3	6.418
	CNS0095597	Whole white alabastrum(diploid) 4	5.343
	CNS0095598	Silvery flower (diploied) 1	7.874
	CNS0095599	Silvery flower (diploied) 2	10.248
	CNS0095600	Silvery flower (diploied) 3	6.147
	CNS0095601	Golden flower (diploid) 1	7.499
	CNS0095602	Golden flower (diploid) 2	12.092
	CNS0095603	Golden flower (diploid) 3	14.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.052
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.271
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.212
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.068
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.111
	CNS0095610	Silvery flower (tetraploid) 1	5.406
	CNS0095611	Silvery flower (tetraploid) 2	7.892
	CNS0095612	Silvery flower (tetraploid) 3	3.429
	CNS0095613	Golden flower (tetraploid) 1	3.421
	CNS0095614	Golden flower (tetraploid) 2	4.963
	CNS0095615	Golden flower (tetraploid) 3	4.899
CRA001975	CRR073297	Stem 1	16.576
	CRR073298	Stem 2	14.855
	CRR073299	Stem 3	18.351
	CRR073300	Leaf 1	10.328
	CRR073301	Leaf 2	15.616
	CRR073302	Leaf 3	15.093
	CRR073303	Juvenile bud 1	6.874
	CRR073304	Juvenile bud 2	6.360
	CRR073305	Juvenile bud 3	6.853
	CRR073306	Third green 1	0.520
	CRR073307	Third green 2	0.343
	CRR073308	Third green 3	0.221
	CRR073309	Second white 1	0.766
	CRR073310	Second white 2	1.181
	CRR073311	Second white 3	0.429
	CRR073312	Silver flowering 1	0.712
	CRR073313	Silver flowering 2	0.505
	CRR073314	Silver flowering 3	1.272
	CRR073315	Gold flowering 1	4.145
	CRR073316	Gold flowering 2	3.700
	CRR073317	Gold flowering 3	4.009
	CRR073318	Tawny withering 1	4.055
	CRR073319	Tawny withering 2	2.533
	CRR073320	Tawny withering 3	3.265