Gene detail

Detail information of GWHGAAZE029994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18410.1	6.7015E-100	unnamed protein product [Coffea canephora]
Swissprot	tr\|P40619\|HMGL_IPONI	5E-36	HMG1/2-like protein
trEMBL	tr\|A0A068VC33\|A0A068VC33_COFCA	2E-100	Coffea canephora DH200=94 genomic scaffold, scaffold_234 {ECO:0000313\|EMBL:CDP18410.1}
TAIR10	AT2G23530.1	1E-60	Zinc-finger domain of monoamine-oxidase A repressor R1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36423234	36437398	+
GWHAAZE00000009	mRNA	36423234	36437398	+
GWHAAZE00000009	exon	36423234	36423505	+
GWHAAZE00000009	exon	36424062	36424298	+
GWHAAZE00000009	exon	36425155	36425238	+
GWHAAZE00000009	exon	36425744	36425906	+
GWHAAZE00000009	exon	36426058	36426165	+
GWHAAZE00000009	exon	36432169	36432422	+
GWHAAZE00000009	exon	36433304	36433648	+
GWHAAZE00000009	exon	36435345	36435428	+
GWHAAZE00000009	exon	36435982	36436142	+
GWHAAZE00000009	exon	36436458	36436494	+
GWHAAZE00000009	exon	36437140	36437398	+
GWHAAZE00000009	CDS	36423234	36423505	+
GWHAAZE00000009	CDS	36424062	36424298	+
GWHAAZE00000009	CDS	36425155	36425238	+
GWHAAZE00000009	CDS	36425744	36425906	+
GWHAAZE00000009	CDS	36426058	36426165	+
GWHAAZE00000009	CDS	36432169	36432422	+
GWHAAZE00000009	CDS	36433304	36433648	+
GWHAAZE00000009	CDS	36435345	36435428	+
GWHAAZE00000009	CDS	36435982	36436142	+
GWHAAZE00000009	CDS	36436458	36436494	+
GWHAAZE00000009	CDS	36437140	36437398	+

Transcript Sequence
>GWHTAAZE030028 ATGGTGAGCAAGAAGGCCAAAGGTCGAACTACTGAGAAAATCCCAAACAAGAGCAGCGAAGAAGAAACTAAAAATGGAGGAGTATTATCATCATCAGCCGGGTATGAGCAGTTCAGGGAGCAAAGAATCAAAGCCAACTTGGAGAGGATGCAGAAATTGGGGATTATGGATCTCTCTAAGAAGCTCAAGTCCGAGTTTAAGCCTCCCCCCAAGCCCAAAAACCCTTCTCAACAGAAGCCTCCCCTACCTCCTCCTTCAAGGCGCTCTTCTAGGTTGAAGACTATGACTCCGGTTAGTTATTTGGAAAAGCGCGCTCCAAAGGAGGAGAAAGTTGTAAAGAAGGTTAAGGTTCATATACCAGAAGGTTCAAAGCCTGAGGTATATACAGAAGAACATGAAAAAGCTTTGGGCAATAGTAAGACTACATGGATTCTATATGTAGATGGATATGACAATGAGGGTCAGCGCATTTATGATCAGTTTGAAGGCAAGAGTTGCCATCAATGCAGGCAGAAAACTCTTGGTCGTCATACTGATTGCAGCAAATGCAAATTGCTCCAAGGGAAGCTTTGTGGAGATTGCTTATATACCAGGTATGGAGAAAATGTGATAGAAGCTAATGAGAATCCGGATTGGACTTGCCCAGCTTGTCGAGGAATCTGCAACTGTAGCCGCTGCCGACGTATAAATGGCTGGGCACCCACTGGTTCCATCTATAAGAAGGTTAACTCTACCAACTTAACATCACTTCACTTGGTGCAAAGCCTGGGTTTCAAGTCTGTGGCGCATTATCTTATTAAAACCCGAGGTCCTCTTGCAAACCGAGAAGAGGAAGAAGCTGAGTTATCCGATGGAAATTCAGTGGCGAAAGTTCGAACTGCGAGAGAAGAAGGAAAAGAAGGAGAATCTCTAAATGACAACAATGGAGGAGGAGGATCACCAGGGTACGAGAAAATCAGGGACGAAACAATCAAAGCCAACATGGAGAAAATGGAGAAATTGGGGGTTGTAGATCTATCTCGCAAGCTCAAATCCCAGATTCATCCCCTCAAGTCCAAAATCCCTTCTCCGAAGAACCCTACCTTGCCTCCCTCTGCTCCCCCAAGGCGCTCTTCCAGGTTGACTGGTAGCGAGCTTGCTGTGAAAAAGAGAGATGAGAAAGCTGGCAAGCAAGCGGCGAAGAAGACGGAGGCGGTGACGGATCCTGATAAACCTAAGAGACCTGCAACCGCCTTCTTTGTCTTCATGGAGGATTTCAGGAAGCAGCACAAAGAGGAACATCCGGACAACAAATCCGTCTCTGTTGTCGGCAAAGCTGGCGGAGACAAATGGAAATTGATGTCTGATGCTGAAAAAGCTTCCTTTGTAGCCAAGGCAGAGAAAAGGAAGGATGAGTACGAGAAGAATATGCAAGCCTACAAAAATAAACAGGCCGAGGGAAATGATGCAGCTGATGAGGAAGAGCAGAAAACTCTTGGTCGTCATACTGATTGCAGCAAATGCAAATCGCTCCAAGGGAAGCTTTGTCGAGATTGCTTATACACCAGGTACAATGCCTTTGATTCAAGTCTGTGGCACATTATCTCATTAAGATCCCAGGTCCTCACACAAACTGTTGAGGAGGAAGAAGAAGCGGAGTTATCTGGTGGAAATTCGGCACTTGGATCAGATGAAGAAGATGGAGATGGTGGCGGTGAGGTGGAAGAAGTAACATGTGTGAAAAGTTGCCTCGAGATGCCACGCAGGTACAATGCCTTTGATTCGAGTCTGTGGCACATTATCTCATTAAGACCCCAGGTCCTCACACAAACTGTGGAGGAGGAAGAAGTGGAGTTATCTGGTGGAAATTCGGCACTTGGATCGGATGAAGAAGATGGAGATGGTGGCGGTGAGGTGGAAGAAGGTAGTGAAGATTATGGCAGCGGATCAGTTGATGATGATGAGGCTGTTGTTGATAAAGATGATGAGCTAAATGAAGAGGAGGATGGCAAAGGCAACATGTAA

Network for GWHGAAZE029994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10497.10	zf-4CXXC_R1	158	250	1.30E-31
PF00505.20	HMG_box	405	474	1.90E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HMG

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.233
	SRR3591706	second leaf	1.123
	SRR3591707	mature leaf	0.241
	SRR3591708	Shoot apex	11.161
	SRR3591709	Stem	2.546
	SRR3591710	White floral bud	1.163
	SRR3591711	White flower	1.324
	SRR3591712	Green floral bud	1.195
	SRR3591713	Yellow flower	1.921
SRP173429	SRR8316895	Juvenile bud stage	2.744
	SRR8316896	Juvenile bud stage	3.323
	SRR8316897	Juvenile bud stage	2.100
	SRR8316894	Third green stage	1.267
	SRR8316900	Third green stage	2.345
	SRR8316901	Third green stage	2.626
	SRR8316898	Complete white stage	0.483
	SRR8316899	Complete white stage	1.588
	SRR8316903	Complete white stage	0.391
	SRR8316902	Silver flowering stage	0.210
	SRR8316904	Silver flowering stage	0.387
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	0.341
	SRR8316907	Gold flowering stage	0.170
	SRR8316908	Gold flowering stage	0.172
SRP132670	SRR6706286	Control	2.117
	SRR6706287	Light intensity 50%	2.416
	SRR6706288	Light intensity 20%	2.271
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.093
	CNS0095593	Slightly white alabastrum(diploid) 2	3.012
	CNS0095594	Slightly white alabastrum(diploid) 3	1.407
	CNS0095595	Whole white alabastrum(diploid) 2	2.416
	CNS0095596	Whole white alabastrum(diploid) 3	0.686
	CNS0095597	Whole white alabastrum(diploid) 4	0.881
	CNS0095598	Silvery flower (diploied) 1	2.715
	CNS0095599	Silvery flower (diploied) 2	3.387
	CNS0095600	Silvery flower (diploied) 3	1.511
	CNS0095601	Golden flower (diploid) 1	1.468
	CNS0095602	Golden flower (diploid) 2	1.192
	CNS0095603	Golden flower (diploid) 3	1.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.781
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.049
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.632
	CNS0095610	Silvery flower (tetraploid) 1	0.526
	CNS0095611	Silvery flower (tetraploid) 2	0.246
	CNS0095612	Silvery flower (tetraploid) 3	0.413
	CNS0095613	Golden flower (tetraploid) 1	0.031
	CNS0095614	Golden flower (tetraploid) 2	0.050
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	4.320
	CRR073298	Stem 2	3.798
	CRR073299	Stem 3	5.407
	CRR073300	Leaf 1	1.716
	CRR073301	Leaf 2	1.723
	CRR073302	Leaf 3	1.988
	CRR073303	Juvenile bud 1	1.071
	CRR073304	Juvenile bud 2	0.768
	CRR073305	Juvenile bud 3	2.091
	CRR073306	Third green 1	0.180
	CRR073307	Third green 2	0.126
	CRR073308	Third green 3	0.238
	CRR073309	Second white 1	0.103
	CRR073310	Second white 2	0.236
	CRR073311	Second white 3	0.167
	CRR073312	Silver flowering 1	0.085
	CRR073313	Silver flowering 2	0.217
	CRR073314	Silver flowering 3	0.154
	CRR073315	Gold flowering 1	1.477
	CRR073316	Gold flowering 2	1.297
	CRR073317	Gold flowering 3	1.115
	CRR073318	Tawny withering 1	2.614
	CRR073319	Tawny withering 2	2.816
	CRR073320	Tawny withering 3	3.005