Detail information of GWHGAAZE029995


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274506.13.65128E-38PREDICTED: F-box protein CPR30-like [Nelumbo nucifera]
Swissprottr|Q9SU30|CPR30_ARATH7E-27F-box protein CPR30
trEMBLtr|A0A061EK90|A0A061EK90_THECC8E-37Uncharacterized protein {ECO:0000313|EMBL:EOY05266.1}
TAIR10AT4G12560.22E-24F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3646203936463178-
GWHAAZE00000009mRNA3646203936463178-
GWHAAZE00000009exon3646203936463178-
GWHAAZE00000009CDS3646203936463178-
Transcript Sequence

Network for GWHGAAZE029995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box2347.20E-07
PF08268.13FBA_32053213.70E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.368
SRR3591706second leaf3.986
SRR3591707mature leaf2.279
SRR3591708Shoot apex5.157
SRR3591709Stem2.576
SRR3591710White floral bud5.975
SRR3591711White flower3.233
SRR3591712Green floral bud6.321
SRR3591713Yellow flower3.606
SRP173429 SRR8316895Juvenile bud stage 0.153
SRR8316896Juvenile bud stage 0.479
SRR8316897Juvenile bud stage 0.094
SRR8316894Third green stage 0.059
SRR8316900Third green stage 0.406
SRR8316901Third green stage 0.360
SRR8316898Complete white stage 0.038
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.032
SRR8316904Silver flowering stage0.060
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.012
SRR6706287Light intensity 50%0.103
SRR6706288Light intensity 20%0.077
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.326
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.343
CNS0095595Whole white alabastrum(diploid) 20.512
CNS0095596Whole white alabastrum(diploid) 30.144
CNS0095597Whole white alabastrum(diploid) 40.259
CNS0095598Silvery flower (diploied) 10.030
CNS0095599Silvery flower (diploied) 20.087
CNS0095600Silvery flower (diploied) 30.147
CNS0095601Golden flower (diploid) 10.462
CNS0095602Golden flower (diploid) 20.126
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.704
CNS0095605Slightly white alabastrum(tetraploid) 20.631
CNS0095606Slightly white alabastrum(tetraploid) 30.463
CNS0095607Whole white alabastrum(tetraploid) 10.473
CNS0095608Whole white alabastrum(tetraploid) 20.336
CNS0095609Whole white alabastrum(tetraploid) 30.347
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.133
CNS0095612Silvery flower (tetraploid) 30.186
CNS0095613Golden flower (tetraploid) 10.154
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.046
CRR073298Stem 20.254
CRR073299Stem 30.232
CRR073300Leaf 10.189
CRR073301Leaf 20.005
CRR073302Leaf 30.025
CRR073303Juvenile bud 10.311
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.050
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.004
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.064
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.192