Gene detail

Detail information of GWHGAAZE030028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088374.1	0	PREDICTED: SWI/SNF complex subunit SWI3D [Sesamum indicum]
Swissprot	tr\|Q8VY05\|SWI3D_ARATH	1E-172	SWI/SNF complex subunit SWI3D
trEMBL	tr\|F6HQL6\|F6HQL6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56973.1}
TAIR10	AT4G34430.3	6E-142	DNA-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	36938887	36945820	+
GWHAAZE00000009	mRNA	36938887	36945820	+
GWHAAZE00000009	exon	36938887	36939445	+
GWHAAZE00000009	exon	36940223	36940749	+
GWHAAZE00000009	exon	36940989	36941122	+
GWHAAZE00000009	exon	36942084	36942666	+
GWHAAZE00000009	exon	36943700	36943863	+
GWHAAZE00000009	exon	36943953	36944431	+
GWHAAZE00000009	exon	36945004	36945182	+
GWHAAZE00000009	exon	36945289	36945820	+
GWHAAZE00000009	CDS	36938887	36939445	+
GWHAAZE00000009	CDS	36940223	36940749	+
GWHAAZE00000009	CDS	36940989	36941122	+
GWHAAZE00000009	CDS	36942084	36942666	+
GWHAAZE00000009	CDS	36943700	36943863	+
GWHAAZE00000009	CDS	36943953	36944431	+
GWHAAZE00000009	CDS	36945004	36945182	+
GWHAAZE00000009	CDS	36945289	36945672	+
GWHAAZE00000009	three_prime_UTR	36945673	36945820	+

Transcript Sequence
>GWHTAAZE030062 ATGGCAGAGAAAGGGGCATACTTTCGAACACAACGACCTCTCAGTCCCCAAAACAAGCCCTTGAGAATGGAGGAAAGGCGTACGGACACCGAAAATCAACAGCCGGCGAACTCCTCCGCCACCGAAACACCTCCGAAGGCGGCAGAAACCCCGCCGCCAGAACCTATTTCCACAAGGCGGAGAGGCGGAGGCAATAAGAGAAAAGCCAGCAACCTCAGTAGCGGCAACAACTCTTCGACTCCCTCAACGTCGTCGTTTTCCTCGAAGCGGCAAGCTCGGGAGAAGATATCGGCGGTGCCATTCCCTCCGATCCATAACGGACCGCTGACCAGAGCTCGGTTGCAACCGAACAACGGTGGCGGAGCACTGGCGATTGACTCGGATGTGAGGAGTGAGGGGCAGGTGGTGGCGCCGCAGGAGTCCGGCGGCGGAGGGGCGGTGAAGGTGGAGGAGGAATTGAGGAAGGAAAATTTTGAGGCATTGGAGGCGAAGATTGAAGCTGAGTATGAAGTTATTAGATCCAGGGAAGCTAATGCTCATGTGGTACCTATTCCTTCCGGTTGGTTTTCCTGGACAAAAGTTCATCCATTGGAGAAGCGAGCATTGCCGTCTTTCTTTAATGGCAAGTCAAAGAGTCGGAATCCTGAAATATACGTGGAGATACGTAATTGGATTATGAATAAATTTCATACAAATCCTAATACCCAAGTCGAATTGAAAGATCTTTCTGAGCTCTCAATTGGAGAGTTGGATGCCAGGCAAGAGGTGATGGAGTTTCTAGATTATTGGGGTTTGATTAACTACCACCCATTCCCCGCAACTGATTCTGCTACTTTGGTTGCTGATGCTGATGGAGGGACAAAATCAGGCTTGTCGGTCGAAAATTTGTATTATTTTGAAAAGGAACAATCATGTGCACCGGCAATTTGCAGGACTAATGTGGCAACACCAACTGTTCCATCCAGGCTATTTTCCGAGTCTGCTATTGCTGAAGAATTGGCAGGTCCTGAAGGGCCATCTGTTGAGTATCATTGCAATTCTTGCTCAGCTGATTGTTCTCGCAAGCGCTATCATTGCCAGAAGCAGCTATACTTTCGGGTTGTTGGAGTCTTTGCTGTGATTAGTCCTAAAGGAGCTGTCTGTTTTCTTGAGAAGACAATTGTAGAGCAGCTGGTGAACTTAACTGAGACTTACTTTGATCAGGACAAGGTCCTTGAAATTCAGGCAGATTTCGATTTATGTTCTGAATGCTTCAGTAGTGCGAAGTTTGGATCTTATATGTCACCCTCGGATTTCATTCTGATGGAGCCTGCTGAGGCTGCTGGCGCAACTGGTGGGAAGTGGACCGATCAAGAGACCCTTCTCCTCCTTGAAGCACTGGAACTTTATAAAGAAAACTGGAGTGAAATTGCCGAGCATGTTGCAACTAAAACAAAATCTCAGTGTATCTTGCACTTTGTTCAAATGCCAATTGAGGACACTTTCTTGGACTGTGATGATGAGACTGATGCTACTAGCCTCATAGGAAGTGCAGATCCAGTTTCAACTGCTGATGATGCTTCGGCTCCTAATGATGAACCCGAAACTGTAGAAAATAAAGATGGTGCTACCAATGACAATCAGCCCTCACCCTCCCCGGTTGAAATTTCAAAACAGGACACCGGTGAACTAAACATCTCTCCAGAAAATGGTGATTGTTGTGCACTGAAGGCTCTCAAAGAAGCATTTGAAGCAGTCGGTTATTTTCCTTCACCTGAAGAGAAACTTTCGTTTTCCGAAGTTGGTAACCCTGTGATGACATTGGCGGCATTCCTAGTACGATTGGCGGAACCGAATGTTGTTACTGCTGCGGCCCACAGTTCTTTGAAAGCAATGTCTGCTAGTGACTCAAGTGTGCAGCTGGCAGCAAGGCACTGCTTCCTTCTGGAAGATCCACCAGATGACAAGAAATCAGCTAATTCTGAGAGAGTTGTTGAAATGATTGAGGAGGAAGGACTGAAAGATAACCAGAACAGCGAAAAACAGAAAGATGAGAATACTAACTCATTTTTGGATAAATCTAATTCATCAAATGACCAAGATAATGAAAAGAACAAGGATTCTGTAACTGAAGAAGGGCCGTTTGTTTCTTCAAAAGACGAGTGTACAAGCAAATCTAATGCTGCAAAAAAATCAGCTGAATCAGATAATCACGATTTGGTGAAGGAACAGGCACCAAGTACTGCTGAAGAATCAAACGTCATAGTGTCCAATGCTGAGCTTCCTCCAAGTTCTGCAAAGGAATCGGGAGATGGAGGTTCATTGAGGCCCTCTCAATCTATAGAGGCTCCAAAGGATGATGAGATTGTATATGATTCTCATCCCTCAGAAAAGAAAGAGCCCGAGCAACCAATTGCATCAGATTCGTGGTTGAAAATGTCGCCAATACAGGTATTATCTTTAAGAATTGCGGAAGAAGCAAAAGACACTCAAGACTCTTCGGAGACCAAACATGACCTCAACATTGATAAGATGAAGCATGCTGCTATAACTGCAATCTCGGCTGCAGCAGTGAAGGCTAAGCTTCTTGCAACCCAAGAAGAAGACCAAATTCGAGAGCTTGCTACATCACTCATAGAGAAGCAGTTACACAAGTTGGAGACCAAGTTGTTTTTCTTCAACGAGATGGAAAATGTGGTAATGAGGGCTAGGGAACAATTGGAAAGGTCAAAGCAGAAGCTTTTTCACGAGAGGTCACAGATAATTGCAGCCAGACTTGGCATGTCAGCATCCTCCGCAAGACCAATGCAACAACAATCATTACCTGTCAACAGAGCTGCAACGGCTTTTGCTCACTCGGCACTAAGGCCCCCAATGGGCATGATGACTTCACAAAGGCCGCCAATTTCGAGACCTGTAATGGCGTCAACAGCAGGTCCGCCTTCAAGCCTATTTGTACCAGCTACGGTTGGAGGGAATTCGATTCCGCCTTCCAACCAGGACAATACTTCTTCGGTTGCAATGAAATAATCTTTCGTCTAAAAAACATTCGTGCTAACACAATGGACTTTCGGCCAAGTGAGTGTTTTTTGTACCATATAAATGTCATTGTTTATTAGTATTTAGTTAATAGATTGACAAATTCTTAAATTGCTCTTTGGAAACTTGAAAATTCCGC

Network for GWHGAAZE030028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	186	268	1.10E-20
PF00249.32	Myb_DNA-binding	446	488	5.90E-12
PF16495.6	SWIRM-assoc_1	844	922	2.80E-24

Protein Sequence

>GWHPAAZE030046
MAEKGAYFRTQRPLSPQNKPLRMEERRTDTENQQPANSSATETPPKAAETPPPEPISTRRRGGGNKRKASNLSSGNNSSTPSTSSFSSKRQAREKISAVPFPPIHNGPLTRARLQPNNGGGALAIDSDVRSEGQVVAPQESGGGGAVKVEEELRKENFEALEAKIEAEYEVIRSREANAHVVPIPSGWFSWTKVHPLEKRALPSFFNGKSKSRNPEIYVEIRNWIMNKFHTNPNTQVELKDLSELSIGELDARQEVMEFLDYWGLINYHPFPATDSATLVADADGGTKSGLSVENLYYFEKEQSCAPAICRTNVATPTVPSRLFSESAIAEELAGPEGPSVEYHCNSCSADCSRKRYHCQKQLYFRVVGVFAVISPKGAVCFLEKTIVEQLVNLTETYFDQDKVLEIQADFDLCSECFSSAKFGSYMSPSDFILMEPAEAAGATGGKWTDQETLLLLEALELYKENWSEIAEHVATKTKSQCILHFVQMPIEDTFLDCDDETDATSLIGSADPVSTADDASAPNDEPETVENKDGATNDNQPSPSPVEISKQDTGELNISPENGDCCALKALKEAFEAVGYFPSPEEKLSFSEVGNPVMTLAAFLVRLAEPNVVTAAAHSSLKAMSASDSSVQLAARHCFLLEDPPDDKKSANSERVVEMIEEEGLKDNQNSEKQKDENTNSFLDKSNSSNDQDNEKNKDSVTEEGPFVSSKDECTSKSNAAKKSAESDNHDLVKEQAPSTAEESNVIVSNAELPPSSAKESGDGGSLRPSQSIEAPKDDEIVYDSHPSEKKEPEQPIASDSWLKMSPIQVLSLRIAEEAKDTQDSSETKHDLNIDKMKHAAITAISAAAVKAKLLATQEEDQIRELATSLIEKQLHKLETKLFFFNEMENVVMRAREQLERSKQKLFHERSQIIAARLGMSASSARPMQQQSLPVNRAATAFAHSALRPPMGMMTSQRPPISRPVMASTAGPPSSLFVPATVGGNSIPPSNQDNTSSVAMK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.831
	SRR3591706	second leaf	12.624
	SRR3591707	mature leaf	12.366
	SRR3591708	Shoot apex	24.715
	SRR3591709	Stem	19.132
	SRR3591710	White floral bud	22.386
	SRR3591711	White flower	21.921
	SRR3591712	Green floral bud	19.008
	SRR3591713	Yellow flower	15.723
SRP173429	SRR8316895	Juvenile bud stage	10.417
	SRR8316896	Juvenile bud stage	14.856
	SRR8316897	Juvenile bud stage	5.910
	SRR8316894	Third green stage	6.234
	SRR8316900	Third green stage	14.401
	SRR8316901	Third green stage	12.878
	SRR8316898	Complete white stage	6.382
	SRR8316899	Complete white stage	20.308
	SRR8316903	Complete white stage	10.394
	SRR8316902	Silver flowering stage	6.371
	SRR8316904	Silver flowering stage	9.787
	SRR8316905	Silver flowering stage	4.409
	SRR8316906	Gold flowering stage	13.401
	SRR8316907	Gold flowering stage	12.984
	SRR8316908	Gold flowering stage	13.793
SRP132670	SRR6706286	Control	16.896
	SRR6706287	Light intensity 50%	17.275
	SRR6706288	Light intensity 20%	17.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.387
	CNS0095593	Slightly white alabastrum(diploid) 2	11.253
	CNS0095594	Slightly white alabastrum(diploid) 3	10.783
	CNS0095595	Whole white alabastrum(diploid) 2	10.193
	CNS0095596	Whole white alabastrum(diploid) 3	9.144
	CNS0095597	Whole white alabastrum(diploid) 4	9.517
	CNS0095598	Silvery flower (diploied) 1	20.349
	CNS0095599	Silvery flower (diploied) 2	16.217
	CNS0095600	Silvery flower (diploied) 3	20.967
	CNS0095601	Golden flower (diploid) 1	16.801
	CNS0095602	Golden flower (diploid) 2	21.184
	CNS0095603	Golden flower (diploid) 3	21.005
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.962
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.742
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.664
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.462
	CNS0095610	Silvery flower (tetraploid) 1	19.390
	CNS0095611	Silvery flower (tetraploid) 2	17.791
	CNS0095612	Silvery flower (tetraploid) 3	17.257
	CNS0095613	Golden flower (tetraploid) 1	10.915
	CNS0095614	Golden flower (tetraploid) 2	16.334
	CNS0095615	Golden flower (tetraploid) 3	16.819
CRA001975	CRR073297	Stem 1	22.785
	CRR073298	Stem 2	21.275
	CRR073299	Stem 3	24.767
	CRR073300	Leaf 1	20.100
	CRR073301	Leaf 2	18.817
	CRR073302	Leaf 3	16.250
	CRR073303	Juvenile bud 1	15.224
	CRR073304	Juvenile bud 2	11.957
	CRR073305	Juvenile bud 3	22.400
	CRR073306	Third green 1	9.824
	CRR073307	Third green 2	9.460
	CRR073308	Third green 3	11.314
	CRR073309	Second white 1	7.193
	CRR073310	Second white 2	11.809
	CRR073311	Second white 3	11.215
	CRR073312	Silver flowering 1	8.908
	CRR073313	Silver flowering 2	6.286
	CRR073314	Silver flowering 3	7.805
	CRR073315	Gold flowering 1	11.228
	CRR073316	Gold flowering 2	14.819
	CRR073317	Gold flowering 3	10.482
	CRR073318	Tawny withering 1	16.598
	CRR073319	Tawny withering 2	12.538
	CRR073320	Tawny withering 3	13.766