Detail information of GWHGAAZE030029


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010065394.12.75316E-86PREDICTED: ras-related protein Rab7 [Eucalyptus grandis]
COGYP_002463522.10.000000008small GTP-binding protein
Swissprottr|P31022|RAB7_PEA5E-83Ras-related protein Rab7
trEMBLtr|A0A059BAC7|A0A059BAC7_EUCGR1E-86Uncharacterized protein {ECO:0000313|EMBL:KCW62846.1}
TAIR10AT3G18820.17E-65RAB GTPase homolog G3F

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3695098336952231-
GWHAAZE00000009mRNA3695098336952231-
GWHAAZE00000009exon3695201036952231-
GWHAAZE00000009exon3695123036951310-
GWHAAZE00000009exon3695098336951126-
GWHAAZE00000009CDS3695201036952231-
GWHAAZE00000009CDS3695123036951310-
GWHAAZE00000009CDS3695098336951126-
Transcript Sequence

Network for GWHGAAZE030029

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras241421.80E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07897RAB7A Endocytosis map04144
Phagosomemap04145
Autophagy - animalmap04140
Autophagy - yeastmap04138
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf117.633
SRR3591706second leaf71.089
SRR3591707mature leaf65.641
SRR3591708Shoot apex85.738
SRR3591709Stem112.445
SRR3591710White floral bud169.317
SRR3591711White flower212.425
SRR3591712Green floral bud101.266
SRR3591713Yellow flower234.675
SRP173429 SRR8316895Juvenile bud stage 63.636
SRR8316896Juvenile bud stage 89.955
SRR8316897Juvenile bud stage 47.853
SRR8316894Third green stage 40.105
SRR8316900Third green stage 122.199
SRR8316901Third green stage 119.215
SRR8316898Complete white stage 126.342
SRR8316899Complete white stage 217.047
SRR8316903Complete white stage 180.212
SRR8316902Silver flowering stage165.977
SRR8316904Silver flowering stage227.392
SRR8316905Silver flowering stage113.085
SRR8316906Gold flowering stage 365.083
SRR8316907Gold flowering stage 307.311
SRR8316908Gold flowering stage 349.668
SRP132670SRR6706286Control78.374
SRR6706287Light intensity 50%90.351
SRR6706288Light intensity 20%91.391
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1104.694
CNS0095593Slightly white alabastrum(diploid) 288.282
CNS0095594Slightly white alabastrum(diploid) 377.810
CNS0095595Whole white alabastrum(diploid) 282.749
CNS0095596Whole white alabastrum(diploid) 371.366
CNS0095597Whole white alabastrum(diploid) 490.694
CNS0095598Silvery flower (diploied) 1130.817
CNS0095599Silvery flower (diploied) 2126.363
CNS0095600Silvery flower (diploied) 3208.058
CNS0095601Golden flower (diploid) 1133.556
CNS0095602Golden flower (diploid) 2183.410
CNS0095603Golden flower (diploid) 3189.109
CNS0095604Slightly white alabastrum(tetraploid) 1104.816
CNS0095605Slightly white alabastrum(tetraploid) 294.458
CNS0095606Slightly white alabastrum(tetraploid) 3141.848
CNS0095607Whole white alabastrum(tetraploid) 170.641
CNS0095608Whole white alabastrum(tetraploid) 266.051
CNS0095609Whole white alabastrum(tetraploid) 3101.808
CNS0095610Silvery flower (tetraploid) 1268.200
CNS0095611Silvery flower (tetraploid) 2228.159
CNS0095612Silvery flower (tetraploid) 3217.238
CNS0095613Golden flower (tetraploid) 1279.927
CNS0095614Golden flower (tetraploid) 2241.930
CNS0095615Golden flower (tetraploid) 3396.256
CRA001975CRR073297Stem 131.872
CRR073298Stem 233.438
CRR073299Stem 324.490
CRR073300Leaf 133.857
CRR073301Leaf 235.838
CRR073302Leaf 334.946
CRR073303Juvenile bud 144.841
CRR073304Juvenile bud 241.693
CRR073305Juvenile bud 336.883
CRR073306Third green 188.031
CRR073307Third green 284.728
CRR073308Third green 375.010
CRR073309Second white 166.834
CRR073310Second white 260.368
CRR073311Second white 353.918
CRR073312Silver flowering 148.628
CRR073313Silver flowering 252.076
CRR073314Silver flowering 334.162
CRR073315Gold flowering 129.865
CRR073316Gold flowering 243.401
CRR073317Gold flowering 325.761
CRR073318Tawny withering 137.641
CRR073319Tawny withering 238.359
CRR073320Tawny withering 339.966