Gene detail

Detail information of GWHGAAZE030049

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97038.1	3.9223E-176	unnamed protein product [Coffea canephora]
COG	YP_003404589.1	5E-62	pectinesterase
Swissprot	tr\|Q9SIJ9\|PME11_ARATH	1E-147	Putative pectinesterase 11
trEMBL	tr\|A0A068TNV0\|A0A068TNV0_COFCA	1E-176	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97038.1}
TAIR10	AT2G21610.1	7E-119	pectinesterase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37401067	37404677	+
GWHAAZE00000009	mRNA	37401067	37404677	+
GWHAAZE00000009	exon	37401067	37401218	+
GWHAAZE00000009	exon	37401362	37401521	+
GWHAAZE00000009	exon	37402071	37402259	+
GWHAAZE00000009	exon	37402768	37403009	+
GWHAAZE00000009	exon	37404287	37404677	+
GWHAAZE00000009	CDS	37401067	37401218	+
GWHAAZE00000009	CDS	37401362	37401521	+
GWHAAZE00000009	CDS	37402071	37402259	+
GWHAAZE00000009	CDS	37402768	37403009	+
GWHAAZE00000009	CDS	37404287	37404482	+
GWHAAZE00000009	three_prime_UTR	37404483	37404677	+

Transcript Sequence
>GWHTAAZE030083 ATGGCTGCCTCTAAAGATACAACCACTGCAATTCTAATAAGAGTTGATCATTCAGGAGGAGGAGATTATAGAAAGATACAAGAGGCCATTGATGCTGTTCCTTCGAATAATTCCGAGCTTGTTTTCATTTGGATCAAACCGGGAACATATAGAGAGAAGATAGTTGTGGCTGCTGACAAGCCATTCATAACTGTGAGTGGGATAGATGCGTCTAACACCGTTATAACATGGAGTGAGAGTGGAGAGATATTTGAGTCTCCAACGTTGTCCGTGTTGGCTTCTGATTTTGTTGCAAGACACCTTACAATTCAGAACACTTTCGGGAAAACAGGGAAAGCAGTAGCGGTGAGGGTGTCGGGGGACAGAGCAGCGTTTTACAGTAGCAGGATAATCTCTTATCAGGACACACTGCTGGATGATGCGGGCAGACATTACTACAGCAACTGTTATATTGAAGGAGGGGTCGATTTCATTTGCGGAAATGCAGCTTCTCTTTTCGAAAGGTGCCATTTGCATTCAGTGGCAGAAGGAAATAATGGAACAATAACAGCTCAAAAAAAGAGTTCACCATTAGAGAATACTGGTTTTACATTCATGGGTTGTAAGGTTACTGGCATTGGCAGTGGTGTTCAGCTTGGAAGGCCATGGGGCACTTACTCTAGGGTTGTCTTTGCCCTCACTTACATGTCCTCTGTCATTTCCCCTGAGGGCTGGAATGATTGGGGTGACTCAGCCAAACATAGTACGGTGTACTATGGAGAATACAAGTGTTACGGACCAGGGTCGAATAGATCAAAGAGGGTCGGGTGGTCACGGAGTCTATCAAGTGATGAGGCTTCACCATTTCTAACCAAGTCCATGATCGGAGGCCGGGCTTGGCTTCGACCCACACCCACCCACTTCAAGAATCTCTCCAACAGCTCCACTCTCAAGAATTAATGACGAAACCAACTAATATAAATATACAATTTAAGGGGGAAAAAAAAAAACTAGCTATTAATTCTAAATTTCTATTTATTCTTAATTTGTTGTACACTAATATACTTATTCATCTCATCTGTATGTAATTTGCCCATATTAATTGTTTCTCCCATGAATATAATTGATTAATCTTCAAGTAGTGGTCTACATGAA

Network for GWHGAAZE030049

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	15	290	1.30E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.166
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.070
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	5.288
	SRR3591711	White flower	10.654
	SRR3591712	Green floral bud	7.288
	SRR3591713	Yellow flower	126.609
SRP173429	SRR8316895	Juvenile bud stage	2.852
	SRR8316896	Juvenile bud stage	4.104
	SRR8316897	Juvenile bud stage	1.691
	SRR8316894	Third green stage	1.451
	SRR8316900	Third green stage	3.629
	SRR8316901	Third green stage	4.834
	SRR8316898	Complete white stage	2.926
	SRR8316899	Complete white stage	6.814
	SRR8316903	Complete white stage	4.102
	SRR8316902	Silver flowering stage	1.302
	SRR8316904	Silver flowering stage	2.122
	SRR8316905	Silver flowering stage	1.108
	SRR8316906	Gold flowering stage	5.730
	SRR8316907	Gold flowering stage	4.036
	SRR8316908	Gold flowering stage	10.270
SRP132670	SRR6706286	Control	4.337
	SRR6706287	Light intensity 50%	3.783
	SRR6706288	Light intensity 20%	3.050
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.544
	CNS0095593	Slightly white alabastrum(diploid) 2	8.054
	CNS0095594	Slightly white alabastrum(diploid) 3	7.459
	CNS0095595	Whole white alabastrum(diploid) 2	3.452
	CNS0095596	Whole white alabastrum(diploid) 3	12.001
	CNS0095597	Whole white alabastrum(diploid) 4	5.323
	CNS0095598	Silvery flower (diploied) 1	2.311
	CNS0095599	Silvery flower (diploied) 2	5.695
	CNS0095600	Silvery flower (diploied) 3	3.028
	CNS0095601	Golden flower (diploid) 1	4.350
	CNS0095602	Golden flower (diploid) 2	14.129
	CNS0095603	Golden flower (diploid) 3	14.575
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.609
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.091
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.942
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.996
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.919
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.156
	CNS0095610	Silvery flower (tetraploid) 1	3.205
	CNS0095611	Silvery flower (tetraploid) 2	1.283
	CNS0095612	Silvery flower (tetraploid) 3	3.969
	CNS0095613	Golden flower (tetraploid) 1	28.586
	CNS0095614	Golden flower (tetraploid) 2	27.332
	CNS0095615	Golden flower (tetraploid) 3	55.366
CRA001975	CRR073297	Stem 1	2.456
	CRR073298	Stem 2	3.089
	CRR073299	Stem 3	2.420
	CRR073300	Leaf 1	6.299
	CRR073301	Leaf 2	3.821
	CRR073302	Leaf 3	3.078
	CRR073303	Juvenile bud 1	4.703
	CRR073304	Juvenile bud 2	9.858
	CRR073305	Juvenile bud 3	6.956
	CRR073306	Third green 1	4.869
	CRR073307	Third green 2	12.735
	CRR073308	Third green 3	12.464
	CRR073309	Second white 1	0.867
	CRR073310	Second white 2	2.369
	CRR073311	Second white 3	4.871
	CRR073312	Silver flowering 1	6.614
	CRR073313	Silver flowering 2	4.516
	CRR073314	Silver flowering 3	6.358
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.581
	CRR073319	Tawny withering 2	1.475
	CRR073320	Tawny withering 3	6.287