Gene detail

Detail information of GWHGAAZE030070

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97024.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TM59\|A0A068TM59_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97024.1}
TAIR10	AT4G39140.5	8E-79	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37712391	37714956	+
GWHAAZE00000009	mRNA	37712391	37714956	+
GWHAAZE00000009	exon	37712391	37712712	+
GWHAAZE00000009	exon	37712818	37712831	+
GWHAAZE00000009	exon	37713854	37713913	+
GWHAAZE00000009	exon	37714000	37714956	+
GWHAAZE00000009	CDS	37712391	37712712	+
GWHAAZE00000009	CDS	37712818	37712831	+
GWHAAZE00000009	CDS	37713854	37713913	+
GWHAAZE00000009	CDS	37714000	37714956	+

Transcript Sequence
>GWHTAAZE030104 ATGGGGTCTGCTTGTTGTGTTGCTGCTAGAGATAGAACTATAACCAATCGCCCAAGCAGTGAAATTGTTCAGAGGAATGCTCGATATTCGCCATCGTGGAGCTTTCGGTGGGATAACAGGGGGAGAGTAGCTGGGGAAGAGACGACTATGAATTGGTTTTCTGATGGACTCAGTAGAAGTGGTGGGTTGGACATCAAATCTGGAACAACTGCAGGAACCACTTACGCATCAGAAGAAGGAAGTCCAATGGATAGTTTCCGAACATGGCATAAGTCCCCAATTTCTGAAGGAGATACTGGGATTTCAAGGCCGCCTCCTTCAGAGGTGTTTGATATGATCTATCAATCTCAAGAAATTCTACTGAGGCAAGTTAGAGAAATATTGGGGTTCATTGCTGTGAAGGAGCTAGCAGAATCCCCAGCAGTTTCAGATCCATCTCCCACTAAGATGATGTCACCTTCGGTACATTCAGTTTCATCCTTGTCAACTACGTCTCCTTTATCATCCCAATGTCTATTCGTTCCCGCAAGCTCAACTCCATCGAGGTGGCCCCGCCGTTCTCCGGGCCATCAATTACTCCGGCAAGTATCTGATAGCCGGATTCCAGTACTCAAGTCCCCAAGCTTTTCAATGTCTGAAGAAGGTTCTTCTTTTGTTCTTCCTGGGTGGAGCAATGAATCAATTAGGGGGTCCCACGGTGGGTCCTCTGACAGTTGGTCTATCCCTCCCTTTTCTGACCTAATGAACACACCTCGTAGAGACAGATGGTCTTTTGATAGTGAGTCGTTGGGATTTAATCGCGATAAATTTAGCAGATCAAGCGGTCGTATTTCTTCTTCTCCCTCTGTTGATATCCAAACCTGTGGGGTTTGCTCAAAGCTTTTAACAGAGAAATCTTCTTGGGGCAGCCAAAAGATTATTGCCACTAACGAGCTTGCTGTGGTTGCCATTCTAATTTGTGGGCACGCTTACCATGCCGAGTGCTTGGAGAATATGACGCCCGAAATTAGCAAGTACGATCCAGCTTGCCCAGTTTGTACTTTTGGGGAGAAGCAGACTTTAAAGTTGTCCGAAAAAGCACTGAGAGCTGAAATGGAATTGAAGGCTAGAAACAAGAGATCAAAGAACCGTGTTGTGGATAGTGAGATGAATGGTGATTCTATTGTGTTTGATCGGCAGAAAAGTAGCGGACATGACCCTAAGATGAGGACAAGTTCTAGCCTGAAGAGCTCTTTGGGGAAGCCTTTTTTGAAGCGACACTTTTCCTTTGGGTCAAAGGGGAGCAGATCCTTGTCGGAGAACCATTCTGCTAGAAAGAAGGGGTTCTTCTGGGCAAAATCTAGCAAGGAATGA

Network for GWHGAAZE030070

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.406
	SRR3591706	second leaf	24.841
	SRR3591707	mature leaf	40.501
	SRR3591708	Shoot apex	28.074
	SRR3591709	Stem	60.357
	SRR3591710	White floral bud	48.325
	SRR3591711	White flower	52.641
	SRR3591712	Green floral bud	43.608
	SRR3591713	Yellow flower	49.637
SRP173429	SRR8316895	Juvenile bud stage	14.134
	SRR8316896	Juvenile bud stage	21.922
	SRR8316897	Juvenile bud stage	11.487
	SRR8316894	Third green stage	10.872
	SRR8316900	Third green stage	26.856
	SRR8316901	Third green stage	31.854
	SRR8316898	Complete white stage	17.012
	SRR8316899	Complete white stage	63.123
	SRR8316903	Complete white stage	28.214
	SRR8316902	Silver flowering stage	15.057
	SRR8316904	Silver flowering stage	22.970
	SRR8316905	Silver flowering stage	10.526
	SRR8316906	Gold flowering stage	37.759
	SRR8316907	Gold flowering stage	37.620
	SRR8316908	Gold flowering stage	41.079
SRP132670	SRR6706286	Control	26.342
	SRR6706287	Light intensity 50%	28.729
	SRR6706288	Light intensity 20%	31.558
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.091
	CNS0095593	Slightly white alabastrum(diploid) 2	16.780
	CNS0095594	Slightly white alabastrum(diploid) 3	21.775
	CNS0095595	Whole white alabastrum(diploid) 2	16.626
	CNS0095596	Whole white alabastrum(diploid) 3	13.763
	CNS0095597	Whole white alabastrum(diploid) 4	15.828
	CNS0095598	Silvery flower (diploied) 1	22.072
	CNS0095599	Silvery flower (diploied) 2	12.479
	CNS0095600	Silvery flower (diploied) 3	31.225
	CNS0095601	Golden flower (diploid) 1	14.211
	CNS0095602	Golden flower (diploid) 2	29.179
	CNS0095603	Golden flower (diploid) 3	29.743
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.216
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.128
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.133
	CNS0095610	Silvery flower (tetraploid) 1	35.762
	CNS0095611	Silvery flower (tetraploid) 2	33.263
	CNS0095612	Silvery flower (tetraploid) 3	32.941
	CNS0095613	Golden flower (tetraploid) 1	22.612
	CNS0095614	Golden flower (tetraploid) 2	32.367
	CNS0095615	Golden flower (tetraploid) 3	39.180
CRA001975	CRR073297	Stem 1	31.660
	CRR073298	Stem 2	32.436
	CRR073299	Stem 3	28.164
	CRR073300	Leaf 1	33.038
	CRR073301	Leaf 2	29.422
	CRR073302	Leaf 3	25.553
	CRR073303	Juvenile bud 1	28.751
	CRR073304	Juvenile bud 2	28.795
	CRR073305	Juvenile bud 3	35.862
	CRR073306	Third green 1	18.143
	CRR073307	Third green 2	19.014
	CRR073308	Third green 3	20.984
	CRR073309	Second white 1	23.949
	CRR073310	Second white 2	27.578
	CRR073311	Second white 3	26.250
	CRR073312	Silver flowering 1	25.170
	CRR073313	Silver flowering 2	23.500
	CRR073314	Silver flowering 3	25.754
	CRR073315	Gold flowering 1	27.213
	CRR073316	Gold flowering 2	36.174
	CRR073317	Gold flowering 3	28.636
	CRR073318	Tawny withering 1	42.863
	CRR073319	Tawny withering 2	39.748
	CRR073320	Tawny withering 3	42.145