Detail information of GWHGAAZE030072


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010922910.10PREDICTED: 26S protease regulatory subunit S10B homolog B-like isoform X2 [Elaeis guineensis]
COGNP_275871.12E-118proteasome-activating nucleotidase
Swissprottr|Q9MAK9|PS10B_ARATH026S protease regulatory subunit S10B homolog B
trEMBLtr|A0A067KQY6|A0A067KQY6_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP38557.1}
TAIR10AT1G45000.10AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3772863537733433-
GWHAAZE00000009mRNA3772863537733433-
GWHAAZE00000009exon3773333137733433-
GWHAAZE00000009exon3773102237731158-
GWHAAZE00000009exon3773075237730913-
GWHAAZE00000009exon3773055837730644-
GWHAAZE00000009exon3773035637730442-
GWHAAZE00000009exon3773012737730264-
GWHAAZE00000009exon3772980337729994-
GWHAAZE00000009exon3772957637729674-
GWHAAZE00000009exon3772915737729201-
GWHAAZE00000009exon3772863537728994-
GWHAAZE00000009CDS3773333137733433-
GWHAAZE00000009CDS3773102237731158-
GWHAAZE00000009CDS3773075237730913-
GWHAAZE00000009CDS3773055837730644-
GWHAAZE00000009CDS3773035637730442-
GWHAAZE00000009CDS3773012737730264-
GWHAAZE00000009CDS3772980337729994-
GWHAAZE00000009CDS3772957637729674-
GWHAAZE00000009CDS3772915737729201-
GWHAAZE00000009CDS3772892037728994-
GWHAAZE00000009three_prime_UTR3772863537728919-
Transcript Sequence

Network for GWHGAAZE030072

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0060


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16450.6Prot_ATP_ID_OB33783.40E-08
PF00004.30AAA1362691.40E-42
PF17862.2AAA_lid_32923346.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03064PSMC6, RPT4 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163biological_processprotein catabolic process
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016787molecular_functionhydrolase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE030072.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200255075125150175225250275Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf201.971
SRR3591706second leaf104.373
SRR3591707mature leaf83.039
SRR3591708Shoot apex162.417
SRR3591709Stem180.359
SRR3591710White floral bud177.906
SRR3591711White flower214.273
SRR3591712Green floral bud178.383
SRR3591713Yellow flower201.524
SRP173429 SRR8316895Juvenile bud stage 99.397
SRR8316896Juvenile bud stage 148.455
SRR8316897Juvenile bud stage 70.885
SRR8316894Third green stage 64.034
SRR8316900Third green stage 181.558
SRR8316901Third green stage 182.163
SRR8316898Complete white stage 97.417
SRR8316899Complete white stage 243.650
SRR8316903Complete white stage 137.626
SRR8316902Silver flowering stage92.491
SRR8316904Silver flowering stage118.542
SRR8316905Silver flowering stage54.625
SRR8316906Gold flowering stage 194.592
SRR8316907Gold flowering stage 190.059
SRR8316908Gold flowering stage 205.092
SRP132670SRR6706286Control145.201
SRR6706287Light intensity 50%147.228
SRR6706288Light intensity 20%160.885
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1131.683
CNS0095593Slightly white alabastrum(diploid) 2141.367
CNS0095594Slightly white alabastrum(diploid) 3124.718
CNS0095595Whole white alabastrum(diploid) 2122.539
CNS0095596Whole white alabastrum(diploid) 3121.011
CNS0095597Whole white alabastrum(diploid) 4108.133
CNS0095598Silvery flower (diploied) 1118.948
CNS0095599Silvery flower (diploied) 2118.656
CNS0095600Silvery flower (diploied) 3185.628
CNS0095601Golden flower (diploid) 1120.821
CNS0095602Golden flower (diploid) 2179.778
CNS0095603Golden flower (diploid) 3172.134
CNS0095604Slightly white alabastrum(tetraploid) 1139.476
CNS0095605Slightly white alabastrum(tetraploid) 2115.912
CNS0095606Slightly white alabastrum(tetraploid) 3197.729
CNS0095607Whole white alabastrum(tetraploid) 194.584
CNS0095608Whole white alabastrum(tetraploid) 294.894
CNS0095609Whole white alabastrum(tetraploid) 3168.250
CNS0095610Silvery flower (tetraploid) 1209.632
CNS0095611Silvery flower (tetraploid) 2191.146
CNS0095612Silvery flower (tetraploid) 3182.118
CNS0095613Golden flower (tetraploid) 1161.041
CNS0095614Golden flower (tetraploid) 2169.924
CNS0095615Golden flower (tetraploid) 3221.321
CRA001975CRR073297Stem 1173.985
CRR073298Stem 2170.369
CRR073299Stem 3183.433
CRR073300Leaf 1204.588
CRR073301Leaf 2195.194
CRR073302Leaf 3205.490
CRR073303Juvenile bud 1223.982
CRR073304Juvenile bud 2222.650
CRR073305Juvenile bud 3201.474
CRR073306Third green 1168.177
CRR073307Third green 2146.381
CRR073308Third green 3148.322
CRR073309Second white 1162.865
CRR073310Second white 2162.532
CRR073311Second white 3129.981
CRR073312Silver flowering 1129.936
CRR073313Silver flowering 2125.798
CRR073314Silver flowering 3125.436
CRR073315Gold flowering 1125.147
CRR073316Gold flowering 2153.543
CRR073317Gold flowering 3128.434
CRR073318Tawny withering 1174.018
CRR073319Tawny withering 2150.893
CRR073320Tawny withering 3176.540