Detail information of GWHGAAZE030076


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009614462.11.5039E-133PREDICTED: chromatin structure-remodeling complex subunit RSC1-like isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q710E8|ORC1A_ARATH0.00000009Origin of replication complex subunit 1A {ECO:0000303|PubMed:16179646}
trEMBLtr|A0A061DZT5|A0A061DZT5_THECC8E-134PHD finger family protein / bromo-adjacent domain-containing protein isoform 1 {ECO:0000313|EMBL:EOX97912.1}
TAIR10AT4G22140.11E-82PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3779140537795356+
GWHAAZE00000009mRNA3779140537795356+
GWHAAZE00000009exon3779140537791910+
GWHAAZE00000009exon3779267037792738+
GWHAAZE00000009exon3779516737795356+
GWHAAZE00000009CDS3779140537791910+
GWHAAZE00000009CDS3779267037792738+
GWHAAZE00000009CDS3779516737795356+
Transcript Sequence

Network for GWHGAAZE030076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01426.19BAH521648.20E-22
PF00628.30PHD1702181.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003682molecular_functionchromatin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.226
SRR3591706second leaf13.341
SRR3591707mature leaf21.221
SRR3591708Shoot apex29.814
SRR3591709Stem44.605
SRR3591710White floral bud37.072
SRR3591711White flower36.699
SRR3591712Green floral bud20.501
SRR3591713Yellow flower26.227
SRP173429 SRR8316895Juvenile bud stage 20.929
SRR8316896Juvenile bud stage 27.350
SRR8316897Juvenile bud stage 12.278
SRR8316894Third green stage 9.999
SRR8316900Third green stage 24.387
SRR8316901Third green stage 21.460
SRR8316898Complete white stage 15.647
SRR8316899Complete white stage 47.812
SRR8316903Complete white stage 26.212
SRR8316902Silver flowering stage15.600
SRR8316904Silver flowering stage21.106
SRR8316905Silver flowering stage9.186
SRR8316906Gold flowering stage 26.502
SRR8316907Gold flowering stage 27.115
SRR8316908Gold flowering stage 34.965
SRP132670SRR6706286Control22.199
SRR6706287Light intensity 50%22.330
SRR6706288Light intensity 20%22.294
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.583
CNS0095593Slightly white alabastrum(diploid) 214.943
CNS0095594Slightly white alabastrum(diploid) 315.268
CNS0095595Whole white alabastrum(diploid) 214.857
CNS0095596Whole white alabastrum(diploid) 312.178
CNS0095597Whole white alabastrum(diploid) 411.780
CNS0095598Silvery flower (diploied) 133.509
CNS0095599Silvery flower (diploied) 222.535
CNS0095600Silvery flower (diploied) 334.955
CNS0095601Golden flower (diploid) 142.964
CNS0095602Golden flower (diploid) 243.542
CNS0095603Golden flower (diploid) 342.776
CNS0095604Slightly white alabastrum(tetraploid) 119.486
CNS0095605Slightly white alabastrum(tetraploid) 214.993
CNS0095606Slightly white alabastrum(tetraploid) 332.732
CNS0095607Whole white alabastrum(tetraploid) 115.270
CNS0095608Whole white alabastrum(tetraploid) 27.697
CNS0095609Whole white alabastrum(tetraploid) 318.646
CNS0095610Silvery flower (tetraploid) 137.386
CNS0095611Silvery flower (tetraploid) 242.663
CNS0095612Silvery flower (tetraploid) 338.582
CNS0095613Golden flower (tetraploid) 122.310
CNS0095614Golden flower (tetraploid) 230.463
CNS0095615Golden flower (tetraploid) 326.048
CRA001975CRR073297Stem 131.704
CRR073298Stem 222.887
CRR073299Stem 323.887
CRR073300Leaf 127.187
CRR073301Leaf 224.278
CRR073302Leaf 319.247
CRR073303Juvenile bud 115.616
CRR073304Juvenile bud 215.970
CRR073305Juvenile bud 322.006
CRR073306Third green 119.945
CRR073307Third green 218.907
CRR073308Third green 317.958
CRR073309Second white 119.705
CRR073310Second white 215.285
CRR073311Second white 313.662
CRR073312Silver flowering 19.404
CRR073313Silver flowering 212.655
CRR073314Silver flowering 36.578
CRR073315Gold flowering 128.656
CRR073316Gold flowering 226.814
CRR073317Gold flowering 326.386
CRR073318Tawny withering 136.732
CRR073319Tawny withering 234.144
CRR073320Tawny withering 329.896