Gene detail

Detail information of GWHGAAZE030082

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042074.1	0	Vacuolar proton ATPase A3 isoform 1 [Theobroma cacao]
COG	NP_147406.2	3E-20	V-type ATP synthase subunit I
Swissprot	tr\|Q8W4S4\|VHAA3_ARATH	0	V-type proton ATPase subunit a3
trEMBL	tr\|A0A061DYW1\|A0A061DYW1_THECC	0	V-type proton ATPase subunit a {ECO:0000256\|RuleBase:RU361189}
TAIR10	AT4G39080.1	0	vacuolar proton ATPase A3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37896862	37905606	-
GWHAAZE00000009	mRNA	37896862	37905606	-
GWHAAZE00000009	exon	37905502	37905606	-
GWHAAZE00000009	exon	37905317	37905424	-
GWHAAZE00000009	exon	37904894	37904954	-
GWHAAZE00000009	exon	37904369	37904382	-
GWHAAZE00000009	exon	37904173	37904283	-
GWHAAZE00000009	exon	37903900	37904073	-
GWHAAZE00000009	exon	37902533	37902670	-
GWHAAZE00000009	exon	37902196	37902303	-
GWHAAZE00000009	exon	37901926	37902033	-
GWHAAZE00000009	exon	37901658	37901806	-
GWHAAZE00000009	exon	37900553	37900661	-
GWHAAZE00000009	exon	37899338	37899498	-
GWHAAZE00000009	exon	37899031	37899237	-
GWHAAZE00000009	exon	37898617	37898800	-
GWHAAZE00000009	exon	37898137	37898220	-
GWHAAZE00000009	exon	37897828	37898033	-
GWHAAZE00000009	exon	37897436	37897495	-
GWHAAZE00000009	exon	37896862	37897066	-
GWHAAZE00000009	CDS	37905502	37905606	-
GWHAAZE00000009	CDS	37905317	37905424	-
GWHAAZE00000009	CDS	37904894	37904954	-
GWHAAZE00000009	CDS	37904369	37904382	-
GWHAAZE00000009	CDS	37904173	37904283	-
GWHAAZE00000009	CDS	37903900	37904073	-
GWHAAZE00000009	CDS	37902533	37902670	-
GWHAAZE00000009	CDS	37902196	37902303	-
GWHAAZE00000009	CDS	37901926	37902033	-
GWHAAZE00000009	CDS	37901658	37901806	-
GWHAAZE00000009	CDS	37900553	37900661	-
GWHAAZE00000009	CDS	37899338	37899498	-
GWHAAZE00000009	CDS	37899031	37899237	-
GWHAAZE00000009	CDS	37898617	37898800	-
GWHAAZE00000009	CDS	37898137	37898220	-
GWHAAZE00000009	CDS	37897828	37898033	-
GWHAAZE00000009	CDS	37897436	37897495	-
GWHAAZE00000009	CDS	37896862	37897066	-

Transcript Sequence
>GWHTAAZE030116 ATGGCTCGCAAGTTACGATTTTTTCGGGAGCAAATATCAAAGGCAGGTTTATCACCTCCAGCACGAAAAGTGTCAAAGGCTGATATTGATGTGGATGGCCTGGAGGTAAAACTTGGAGAGCTTGAAGCTGAGCTGATTGAAATAAATGCAAATAGTGAAAAGTTGCAGGATGCTTATAGTGAACTTGTAGAATATAAGCTTGTTCTGCAGAAGGGATTACCACTGCCTTCTAATTTGCCTGCTCTCAATGATGGCAGTGCAAGAATGGTCAGAGGAGGCACTGCAGAGGCTGGTGAGTTTTTCCAAGCAGCCCGAAGTTCTGCTACTGCTCAGCAGAGAGAAATTGGATCGACTCAGATTGGCGAAGAATCCTTGGAAATTCCTTTGTTAATGGAGCAAGAAATGACGAATGACCAGGCCAAACAAGTTAAGTTGGGGTTTCTCGCTGGCCTTGTGCCTAAGGAAAAATCTATGGCATTTGAAAGGATTCTATTTCGTGCTACCAGGGGAAATGTTTTTCTGAAGCAGGCCGTTCTTGATGATCCCATCATTGATCCTGTTTCAGGAGAAAAGGTTGTGAAAAATGTTTTTGTGCTCTTCTTCTCTGGAGAAAGAGCAAAGAACAAAATTCTGAAGATATGCGATGTTTTTGGAGCAAATCGTTACCCTTTTGCTGAGGACCTGAGTAGACAAGCTCAAATGATAACTGAGGTTTCCGGAAGACTATTAGAGCTAAAGACTACAATAGATGCTGGTCTACTGCACCGTGGAGATCTGTTACGAACTATCGCGGAACAATCTGAGCAGTGGAATATTTTGGTCAGGAGGGAGAAATCCATTTACCACACTCTAAACATGCTCAGCATTGATGTGACAAAGAAGTGTCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACTAAACAGATTCAGGAAGCACTATACCGAGCAACACGTGATTCCAACTCCCAAGTTGGTGCCATTTTCCAGGTTTTGCATGTGAAAGAGTCACCACCAACTTATTTCCGGACAAACAAATTTACTTCCGCTACTCAAGAGATTGTTGATGCATATGGGGTGGCCAAGTACCAAGAGGCAAATCCTGGTGTATTCACTGTTGTTACATTTCCATTTCTCTTTGCAGTCATGTTTGGTGACTGGGGGCATGGTATATGCTTGTTACTGAAACTTGGAGACATTACAGAAATGACCTTCGGTGGTCGTTATGTTATATTGATGATGGCGCTATTCTCAATATACACAGGTTTGATATACAATGAGTTCTTCTCAGTTCCGTTTGAATTATTTGCTCCTTCAGCCTATACCTGTCGTGATCCAGCTTGCAGGGATGCTACTACTGTAGGCTTGATCAAGGTGCGAGACACTTACCCATTTGGGGTGGATCCAGCATGGCATGGTACTCGCAGCGAGTTGCCATTTCTTAACTCATTGAAGATGAAAATGTCAATCCTTCTTGGGGTAGCCCAAATGAACCTTGGAATAATAATGAGCTTTTTCAATGCCAAATTCTTTCAAAGTAGTGTGAATATCTGGTTCCAGTTTATTCCCCAGATGATATTTTTGAATGGTCTATTTGGTTACCTTTCTGTCCTCATCATTATAAAGTGGATCACTGGTTCCAAAGCTGATCTGTACCATGTAATGATATACATGTTCCTTAGTCCTACTGACAATCTTGGGGAAAATCAGCTTTTCGAGGGGCAGAAAACAGCTCAGATTGTGCTGTTATTACTGTCCCTTGTTGCTGTCCCATGGATGCTGCTCCCAAAGCCTTTTATTTTGAAGGCACAACATGAAAATAGGCACCGTGGTGAGTCGTACAGCCGCCTTGAGGGTACCGATGGCTCCTTGGAGGTGGAGGCAAACAATGATTCCCGTGGTCATGGCCACGGCCATGAAGAATTTGAGTTTAGTGAAATTTTTGTGCACCAGCTCATACATACAATAGAGTTCGTACTTGGAGCAGTCTCCAACACAGCTTCATACCTTCGTTTGTGGGCCCTCAGCCTTGCCCATTCCGAGTTGTCAAGTGTGTTCTATGAGAAGGTTCTTCTTCTTGCTTGGGGGTACAACAATGTCATTATACTCATAGTGGGTGTCATTGTTTTCGTTTTTGCCACTGTGGGCGTATTGCTAGTAATGGAAACACTAAGTGCTTTCTTGCATGCCCTAAGGCTCCATTGGGTGGAGTTTCAGAACAAGTTCTATGAAGGTGATGGATACAAGTTTTCTCCGTTCACATTCGCATTGCTTGGTGATGAAGAAGAATGA

Network for GWHGAAZE030082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01496.20	V_ATPase_I	1	755	1.60E-260

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02154	ATPeV0A, ATP6N	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033179	cellular_component	proton-transporting V-type ATPase, V0 domain
GO:0000220	cellular_component	vacuolar proton-transporting V-type ATPase, V0 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.948
	SRR3591706	second leaf	2.173
	SRR3591707	mature leaf	0.417
	SRR3591708	Shoot apex	9.404
	SRR3591709	Stem	3.417
	SRR3591710	White floral bud	1.636
	SRR3591711	White flower	0.909
	SRR3591712	Green floral bud	10.274
	SRR3591713	Yellow flower	0.144
SRP173429	SRR8316895	Juvenile bud stage	9.791
	SRR8316896	Juvenile bud stage	16.927
	SRR8316897	Juvenile bud stage	8.607
	SRR8316894	Third green stage	8.061
	SRR8316900	Third green stage	17.556
	SRR8316901	Third green stage	17.274
	SRR8316898	Complete white stage	1.212
	SRR8316899	Complete white stage	7.621
	SRR8316903	Complete white stage	1.530
	SRR8316902	Silver flowering stage	0.098
	SRR8316904	Silver flowering stage	0.442
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	0.432
	SRR8316907	Gold flowering stage	0.048
	SRR8316908	Gold flowering stage	0.595
SRP132670	SRR6706286	Control	9.424
	SRR6706287	Light intensity 50%	12.091
	SRR6706288	Light intensity 20%	13.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.675
	CNS0095593	Slightly white alabastrum(diploid) 2	12.159
	CNS0095594	Slightly white alabastrum(diploid) 3	9.832
	CNS0095595	Whole white alabastrum(diploid) 2	12.052
	CNS0095596	Whole white alabastrum(diploid) 3	13.515
	CNS0095597	Whole white alabastrum(diploid) 4	9.867
	CNS0095598	Silvery flower (diploied) 1	2.174
	CNS0095599	Silvery flower (diploied) 2	2.487
	CNS0095600	Silvery flower (diploied) 3	0.991
	CNS0095601	Golden flower (diploid) 1	1.404
	CNS0095602	Golden flower (diploid) 2	1.516
	CNS0095603	Golden flower (diploid) 3	1.060
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.763
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.271
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.186
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.292
	CNS0095610	Silvery flower (tetraploid) 1	0.294
	CNS0095611	Silvery flower (tetraploid) 2	0.611
	CNS0095612	Silvery flower (tetraploid) 3	0.132
	CNS0095613	Golden flower (tetraploid) 1	0.021
	CNS0095614	Golden flower (tetraploid) 2	0.134
	CNS0095615	Golden flower (tetraploid) 3	0.049
CRA001975	CRR073297	Stem 1	12.576
	CRR073298	Stem 2	11.074
	CRR073299	Stem 3	7.971
	CRR073300	Leaf 1	15.566
	CRR073301	Leaf 2	13.342
	CRR073302	Leaf 3	12.724
	CRR073303	Juvenile bud 1	10.242
	CRR073304	Juvenile bud 2	7.771
	CRR073305	Juvenile bud 3	6.833
	CRR073306	Third green 1	0.416
	CRR073307	Third green 2	1.045
	CRR073308	Third green 3	0.826
	CRR073309	Second white 1	0.098
	CRR073310	Second white 2	0.148
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.131
	CRR073313	Silver flowering 2	0.199
	CRR073314	Silver flowering 3	0.077
	CRR073315	Gold flowering 1	0.163
	CRR073316	Gold flowering 2	0.109
	CRR073317	Gold flowering 3	0.334
	CRR073318	Tawny withering 1	4.350
	CRR073319	Tawny withering 2	2.721
	CRR073320	Tawny withering 3	4.499