Gene detail

Detail information of GWHGAAZE030083

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDX89488.1	3.27006E-22	BnaC04g35070D [Brassica napus]
Swissprot	tr\|Q9SJT7\|VHAA2_ARATH	5E-14	V-type proton ATPase subunit a2
trEMBL	tr\|A0A078DQK0\|A0A078DQK0_BRANA	1E-22	BnaC04g35070D protein {ECO:0000313\|EMBL:CDX89488.1}
TAIR10	AT2G21410.1	6E-13	vacuolar proton ATPase A2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37907632	37908920	-
GWHAAZE00000009	mRNA	37907632	37908920	-
GWHAAZE00000009	exon	37908738	37908920	-
GWHAAZE00000009	exon	37908338	37908423	-
GWHAAZE00000009	exon	37907632	37908136	-
GWHAAZE00000009	five_prime_UTR	37908891	37908920	-
GWHAAZE00000009	CDS	37908738	37908890	-
GWHAAZE00000009	CDS	37908338	37908423	-
GWHAAZE00000009	CDS	37907902	37908136	-
GWHAAZE00000009	three_prime_UTR	37907632	37907901	-

Transcript Sequence
>GWHTAAZE030117 TTAGAAGAGAGAGAGAGTTAGAATAGAACAATGGCAGTATCCGGTGGTGGTGGAGGTTGCTGTCCGCCGATGGATCTACTCCGTTCAGAGCCCATGCATCTTGTCCAACTTATCATTCCCATTGAAGCCGCTCATTTAACCGCCGCTTACCTAGGCGATCTCGGCCTCATTCAATTCAAAGACCAAAACTGCGCACTGATAGAGGTTCTGGTATGGCTACAGATAGAAATGGTTATGTGTATTTCCATCATTTTTAGTTTTCTATATCAGAAGGTACAAACGGTAGTTGACCAGACTGATTCCTGCTGGGACCTCAGTGCAGCAAACTTAACCATTTTCGGCGGATCAATCCCACTTCCTGCTACTAGAGACTATGACTGGGCAGCCAAGAGGACAATAACTCGGCAAAGACTGTGCCAATCGGTGCACATTTGGATCACATCAGCATCTCTGTACAAAGTGCTAGGTTTACCGCAAGAATTTCGTGAAGATCAGCCCAGTTGAACTAACTACGCATGCCAAGGCTATTAAGCCCTTCTATTTGTAGGGCTAACTACCTACAGAGGGCTATGTAAGACCATGGGCCACATATAAGTTAACATGTGGCCCACTGTTATGTAGGCAGTAGTAAAACTGGCTACATAAATGAAGGATCGAAGTGCAGAATTTTACTCTAGATTCTTTGTACTCTGTCTTCTCACTTGAAAGAAATTTCTCAAAGCGCTAAACTATTCTCCATATTTAACTGCTTGTGACACTTGCACTATAAATAAA

Network for GWHGAAZE030083

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02154	ATPeV0A, ATP6N	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Collecting duct acid secretion	map04966
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.044
	SRR3591706	second leaf	1.548
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.287
	SRR3591709	Stem	0.997
	SRR3591710	White floral bud	0.942
	SRR3591711	White flower	0.487
	SRR3591712	Green floral bud	1.784
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.731
	SRR8316896	Juvenile bud stage	4.120
	SRR8316897	Juvenile bud stage	1.875
	SRR8316894	Third green stage	3.883
	SRR8316900	Third green stage	5.078
	SRR8316901	Third green stage	4.612
	SRR8316898	Complete white stage	0.290
	SRR8316899	Complete white stage	3.283
	SRR8316903	Complete white stage	0.946
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.273
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.247
	SRR8316907	Gold flowering stage	0.091
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	6.852
	SRR6706287	Light intensity 50%	7.640
	SRR6706288	Light intensity 20%	7.603
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.342
	CNS0095593	Slightly white alabastrum(diploid) 2	1.804
	CNS0095594	Slightly white alabastrum(diploid) 3	1.042
	CNS0095595	Whole white alabastrum(diploid) 2	1.506
	CNS0095596	Whole white alabastrum(diploid) 3	2.236
	CNS0095597	Whole white alabastrum(diploid) 4	0.400
	CNS0095598	Silvery flower (diploied) 1	0.606
	CNS0095599	Silvery flower (diploied) 2	0.142
	CNS0095600	Silvery flower (diploied) 3	0.373
	CNS0095601	Golden flower (diploid) 1	0.680
	CNS0095602	Golden flower (diploid) 2	0.099
	CNS0095603	Golden flower (diploid) 3	0.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.916
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.724
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.678
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.412
	CNS0095612	Silvery flower (tetraploid) 3	0.044
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.053
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.091
	CRR073298	Stem 2	3.893
	CRR073299	Stem 3	1.415
	CRR073300	Leaf 1	5.303
	CRR073301	Leaf 2	4.516
	CRR073302	Leaf 3	2.508
	CRR073303	Juvenile bud 1	1.435
	CRR073304	Juvenile bud 2	0.797
	CRR073305	Juvenile bud 3	1.129
	CRR073306	Third green 1	0.266
	CRR073307	Third green 2	0.257
	CRR073308	Third green 3	0.396
	CRR073309	Second white 1	0.066
	CRR073310	Second white 2	0.080
	CRR073311	Second white 3	0.068
	CRR073312	Silver flowering 1	0.076
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.157
	CRR073315	Gold flowering 1	0.033
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.058
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.538
	CRR073320	Tawny withering 3	0.150