Gene detail

Detail information of GWHGAAZE030086

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009785998.1	0	PREDICTED: DNA replication licensing factor MCM4 [Nicotiana sylvestris]
COG	YP_001737781.1	3E-130	MCM family protein
Swissprot	tr\|Q0WVF5\|MCM4_ARATH	0	DNA replication licensing factor MCM4
trEMBL	tr\|M1D202\|M1D202_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400079535}
TAIR10	AT2G16440.1	0	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	37978915	37985262	-
GWHAAZE00000009	mRNA	37978915	37985262	-
GWHAAZE00000009	exon	37978915	37979178	-
GWHAAZE00000009	exon	37979285	37979421	-
GWHAAZE00000009	exon	37979506	37979584	-
GWHAAZE00000009	exon	37979664	37979744	-
GWHAAZE00000009	exon	37980233	37980394	-
GWHAAZE00000009	exon	37980496	37980592	-
GWHAAZE00000009	exon	37980953	37981113	-
GWHAAZE00000009	exon	37981287	37981385	-
GWHAAZE00000009	exon	37981494	37981706	-
GWHAAZE00000009	exon	37982047	37982160	-
GWHAAZE00000009	exon	37982250	37982375	-
GWHAAZE00000009	exon	37982453	37982524	-
GWHAAZE00000009	exon	37982620	37982752	-
GWHAAZE00000009	exon	37983534	37983615	-
GWHAAZE00000009	exon	37983715	37983816	-
GWHAAZE00000009	exon	37983944	37984588	-
GWHAAZE00000009	exon	37985226	37985262	-
GWHAAZE00000009	CDS	37985226	37985262	-
GWHAAZE00000009	CDS	37983944	37984588	-
GWHAAZE00000009	CDS	37983715	37983816	-
GWHAAZE00000009	CDS	37983534	37983615	-
GWHAAZE00000009	CDS	37982620	37982752	-
GWHAAZE00000009	CDS	37982453	37982524	-
GWHAAZE00000009	CDS	37982250	37982375	-
GWHAAZE00000009	CDS	37982047	37982160	-
GWHAAZE00000009	CDS	37981494	37981706	-
GWHAAZE00000009	CDS	37981287	37981385	-
GWHAAZE00000009	CDS	37980953	37981113	-
GWHAAZE00000009	CDS	37980496	37980592	-
GWHAAZE00000009	CDS	37980233	37980394	-
GWHAAZE00000009	CDS	37979664	37979744	-
GWHAAZE00000009	CDS	37979506	37979584	-
GWHAAZE00000009	CDS	37979285	37979421	-
GWHAAZE00000009	CDS	37978915	37979178	-

Transcript Sequence
>GWHTAAZE030120 ATGGCTTCCGATTCTTCTCCGGCAAACTTCAATGGAGCACCGTCATCTCCCGATGACTCAATGTCGAGTCCGATCGGGAACACATTCTCCTCCCCCGGCGATGCCACCCGCCGAAAGCGGGGCCGCAGGTCCACCGCCTCATACGCAACCCCACCGCCACCTCCAAACTCGCGATTTGCCACTCCAGAGGCAACGCCTACTCCATCCAGCCGGAGAGACCGAGGAAGAGCCCCATCATCCACTCCCATCGCCGCCACTCCTTCATCTGCTGATGAAGCCCCGCCTTCTTCCGAGGCCGGTGAAGGCGATGATGCAGAGGAGGCCCCACCGATGTTTGTTTGGGGGACTAACATTAGTGTTCAAGATGTAAATGCCGCAATTCTAAGGTTCCTGAGGAATTTTCGAGAACAATCTTTGGAAAATGAGGGGAAGTACATGAGAGCAATTCATCATGTAATTGAAGTTGAGGGAGAGTCACTTGAGGTGGATGCACACCACGTTTTTGATTATGACACTGATTTGTATATGAAAATGGTTAGGTATCCGCTAGAGGTTCTTGCTATTTTTGATATTGTGTTGATGGATATGGTTAGTAGAATTAACCCTTACTTTGAGAAGCACATTCAAGCTCGTATATTCAATCTCAAAACATCTGTTTCTATGAGAAATCTTAACCCATCTGGGATGGTTATTCGATGTAGTTCGATTATACCCGAGATCAGGGAAGCTGTATTTAGATGCCTTGTGTGTGGATACTATTCTGACCCCATTGTTGTCGACAGAGGACGAATTAGCGAGCCCACTCAATGCGGGAAGCAAGAATGTCAAACCAAGAATGCAATGACACTGGTTCACAACAGGTGCAGGTTTGCTGATAAACAAATTGTGAAGCTTCAAGAGACACCAGATGAGATCCCTGATGGTGGGACACCTCACACTGTGAGCTTATTGATGCACGACAAGCTGGTAGATGCTGGGAAGCCAGGTGACAGAGTTGAGGTCACTGGGATTTATAGGGCTATGACCGTCAGAGTTGGACCAACACAAAGGACTGTGAAGTCTTTATTCAAGACATATGTTGATTGCCTTCATTTGAAGAAGACAGACAAGTCAAGGATGAATGCAGAGGATCCAATGGAAACTGTGAATGGCTCTAGTATAAATGATGAAGACACTCCTCTCGACTATGATGACAAGGTGGAGCAATTGAAAGAGTTGTCAAGACAGCCAGATATCTATGAGAGGCTAACCAGATCTTTGGCACCAAATATATGGGAACTAGATGATGTAAAGAAAGGGCTTCTTTGCCAGCTTTTTGGTGGGAATGCATTGAAGCTGAAATCTGGGGCCAGCTTCCGAGGTGACATCAATATCCTTCTAGTGGGTGATCCTGGAACCAGCAAATCCCAGCTGCTCCAGTACATACACAAGTTAGCTCCTCGTGGTATTTACACCAGTGGGAGAGGGAGCTCAGCTGTTGGATTGACTGCTTACGTGGCCAAGGATCCTGAAACCGGTGAAACTGTTCTGGAGAGTGGAGCCTTGGTTCTTAGTGACAAAGGCATCTGCTGCATTGATGAATTTGATAAAATGTCCGAAAACGCCAGGAGCATGCTCCACGAGGTGATGGAACAACAAACTGTATCAATAGCAAAGGCAGGGATCATTGCTTCCCTTAATGCAAGAACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGCTCACGCTATAATGCTCGTTTGTCTGTGATTGACAATATACATCTTCCTCCTACCTTATTGTCCAGGTTTGATTTGATTTACTTAATTCTTGATAAGGCTGATGAACAGACAGATAGACGCCTTGCTAAGCACATTGTAGCATTACACTTTGAAGATCCCGAGAACTCAGAGCAGGATGTCATAGACCTTCCAACATTAACTGCGTATTTGAGTTACGCAAGAAAAAATATACATCCTCAGTTGTCTGATGAAGCTGCTGAACAGTTGACAAGTGGTTATGTTGAGATGAGGAGAAGGGGCAATTTCCCAGGCAGTAGTAAAAAGGTAATAACAGCAACACCTAGACAAATCGAAAGTTTGATACGCCTTAGTGAGGCCTTGGCTCGGATTCGTTTCTCAGAAGTGGTGGAGAAACGAGATGTATTAGAGGCTTTTCGGCTTCTTGATGTTGCAATGCAACAGTCTGCAACAGATCACTCCACCGGTACCATCGATATGGATCTCATCACAACCGGTGTTTCTTCAAGCGAAAGGATGCGAAGGGAGAATTTGGTATCACTTACTCGCAACATCATCACGGAAAAGATGCAACTTGGGGGGCCCTCCACGGGATTAATGGAGCTACTAGAAGAATTGAAGAAGCAGAGTTCTGGGCCTGAAGTCCACCTTGGCGATGTAAGTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCTCTACTGATGAATTTACTATATTAATGTCAGCTGCGAACTGCGCTCTCTACTCTTGCAAGCGAGGGATTTGTGGTGGTTCACGGCAACAGTGTAAAGAGAATATGAAGAGAGCATTCACATCAAGGGGTGACTTAACTGCCTACACTTCCAAGTATGAACCTAAGATATAG

Network for GWHGAAZE030086

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14551.7	MCM_N	126	208	3.20E-13
PF17207.4	MCM_OB	227	341	4.50E-33
PF00493.24	MCM	400	622	5.00E-101
PF17855.2	MCM_lid	638	724	1.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02212	MCM4, CDC54	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:0006260	biological_process	DNA replication
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0003678	molecular_function	DNA helicase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.911
	SRR3591706	second leaf	7.751
	SRR3591707	mature leaf	1.211
	SRR3591708	Shoot apex	63.796
	SRR3591709	Stem	6.763
	SRR3591710	White floral bud	1.981
	SRR3591711	White flower	1.154
	SRR3591712	Green floral bud	3.150
	SRR3591713	Yellow flower	0.249
SRP173429	SRR8316895	Juvenile bud stage	8.524
	SRR8316896	Juvenile bud stage	7.467
	SRR8316897	Juvenile bud stage	4.390
	SRR8316894	Third green stage	2.464
	SRR8316900	Third green stage	2.855
	SRR8316901	Third green stage	1.310
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	1.373
	SRR8316903	Complete white stage	0.342
	SRR8316902	Silver flowering stage	0.072
	SRR8316904	Silver flowering stage	0.228
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.069
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.172
SRP132670	SRR6706286	Control	4.354
	SRR6706287	Light intensity 50%	5.123
	SRR6706288	Light intensity 20%	5.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.633
	CNS0095593	Slightly white alabastrum(diploid) 2	5.542
	CNS0095594	Slightly white alabastrum(diploid) 3	3.083
	CNS0095595	Whole white alabastrum(diploid) 2	2.828
	CNS0095596	Whole white alabastrum(diploid) 3	0.766
	CNS0095597	Whole white alabastrum(diploid) 4	2.233
	CNS0095598	Silvery flower (diploied) 1	8.737
	CNS0095599	Silvery flower (diploied) 2	12.920
	CNS0095600	Silvery flower (diploied) 3	3.157
	CNS0095601	Golden flower (diploid) 1	3.937
	CNS0095602	Golden flower (diploid) 2	1.868
	CNS0095603	Golden flower (diploid) 3	1.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.969
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.150
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.187
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.706
	CNS0095610	Silvery flower (tetraploid) 1	0.476
	CNS0095611	Silvery flower (tetraploid) 2	1.042
	CNS0095612	Silvery flower (tetraploid) 3	1.576
	CNS0095613	Golden flower (tetraploid) 1	0.147
	CNS0095614	Golden flower (tetraploid) 2	0.078
	CNS0095615	Golden flower (tetraploid) 3	0.156
CRA001975	CRR073297	Stem 1	19.503
	CRR073298	Stem 2	15.456
	CRR073299	Stem 3	21.493
	CRR073300	Leaf 1	1.843
	CRR073301	Leaf 2	1.837
	CRR073302	Leaf 3	2.034
	CRR073303	Juvenile bud 1	1.742
	CRR073304	Juvenile bud 2	0.314
	CRR073305	Juvenile bud 3	1.335
	CRR073306	Third green 1	0.149
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.418
	CRR073309	Second white 1	0.079
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.118
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.203
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.314
	CRR073316	Gold flowering 2	1.028
	CRR073317	Gold flowering 3	0.362
	CRR073318	Tawny withering 1	14.847
	CRR073319	Tawny withering 2	9.198
	CRR073320	Tawny withering 3	19.397