Gene detail

Detail information of GWHGAAZE030097

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007135922.1	2.7055E-115	hypothetical protein PHAVU_009G003300g [Phaseolus vulgaris]
Swissprot	tr\|Q9SIV5\|C3H19_ARATH	8E-70	Zinc finger CCCH domain-containing protein 19
trEMBL	tr\|V7AUM1\|V7AUM1_PHAVU	1E-115	Uncharacterized protein {ECO:0000313\|EMBL:ESW07916.1}
TAIR10	AT2G16485.1	2E-64	nucleic acid binding;zinc ion binding;DNA binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	38263748	38269425	-
GWHAAZE00000009	mRNA	38263748	38269425	-
GWHAAZE00000009	exon	38269121	38269425	-
GWHAAZE00000009	exon	38268952	38269043	-
GWHAAZE00000009	exon	38266612	38266796	-
GWHAAZE00000009	exon	38263748	38264608	-
GWHAAZE00000009	CDS	38269121	38269425	-
GWHAAZE00000009	CDS	38268952	38269043	-
GWHAAZE00000009	CDS	38266612	38266796	-
GWHAAZE00000009	CDS	38263748	38264608	-

Transcript Sequence
>GWHTAAZE030131 ATGGCGGTGGATAAAGAGCCGACTGGAGAGGATGAGATTCCGGTGGTTGATTCAGATACGGAAACTGAAACAGATACAGATAGAGAGATAATAGATGGAGTGCATTTAGAGCTCGTTGCTGACGTGTCAGTGAGTGGTGCTGATGATGAAGAAACCGAGAGTGACGTGGCGGCAGAGCCGGTGAGAGTTGTTGAAGTGAAGCAGAAGAGTTCTAGAATTCCGGCGAAGAAGAAGAAGAGGTTAATAGGGGAGGAAGTTTGCTTCATTTGTTTTGATGGTGGTGAACTCTTCTTATGTGACCGTAGGGGATGTAATAAAGGTTACCACAGTTCGTGTGTTAACCGCGATGAGGCATTCTTTCGAGCTAAGGGTGTATGGACTTGTGGTGAGAGTCATGGTTGGCATATATGTAGCATCTGTGAGAAGGATGCATATTATAAATGTTATACATGCCCATATTCCTTGTGCAAGGGTTGTGTTAAGGATGGTGTTATCTTCTGTGTAAGAGGAAACAAAGGCTTTTGTGAGTCTTGCATGGAGGTAGTGAAGTTGATTGAAAATATCAATCAGGGAAACAAGGAGGTGCAAGTAGATTTTGATGATAAGAGTAGCTGGGAGTTCCTCTTTAAGGATTACTATGTTGAATTAAAAGAAAAGCTATCCCTATCAATGGACGAACTTTCCCAGGCAAAGAATCCATGGAAAAGTTCTGATGCATTGACCATCAAAGAGAAATCACCCAATGAGCAATTTAATGTCGACTATGGTGCAAGTTCTTCAGATTCGGACAATCCTTCTATGCACCTAGAAGAGGCGAGATTATCTAAGAAAAGGAGTAATAAACGATTGAGGACTACCAAACAAAAATCACTTGATGGGCATTTTGATGTACATGATGATGAAAGTTCTGGTTCTGATAAAATAAGAGAGGCTAAGAAACGGTTGAATTATGGTAAACTTAAATCACTTGATGGGCATTTTGATGTACATTATGATGGAAGTTCTGGTTCAGACACTCCTTCTAGGAACCTAGAAGCAAGAAAACCAATAAAAAGAAAGGCTAAGAAACGGTTGAAGAAATTAACTGATGTTGATGCGGAAGCGATTTCTGTGAATCAAAACCAATGGGCATCAAAGGAGCTTCTTGAATTTGTTATGCACACTAAAAATGGCGACGGATCTATTTCATCTCAGTCTGTTGTACAAGAACTTTTGCTTGAATATATTACAAGGAACAAACTCCGGGATCCTCAATGGAAGAGTCAAATCAATTGCGATGCTAGGCTCGAAAGTCTTTTTGGAAAAGCGTGTGTGGGGCATTTTGAAATGTTCAAACTTCTTGATTCTCACTTTCTTATAAAGGTGGATTCTAAGGATGATGATACTGAAGTTAACGACAACGGTGGTAACGACAGGAAAAGAAAAATTCGTAAGAAAGGGGAT

Network for GWHGAAZE030097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02201.19	SWIB	378	451	9.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.078
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.046
	SRR3591712	Green floral bud	0.256
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.793
	SRR8316896	Juvenile bud stage	1.225
	SRR8316897	Juvenile bud stage	1.228
	SRR8316894	Third green stage	0.553
	SRR8316900	Third green stage	0.519
	SRR8316901	Third green stage	0.721
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.091
	SRR8316903	Complete white stage	0.119
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.482
	SRR6706287	Light intensity 50%	0.510
	SRR6706288	Light intensity 20%	0.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.404
	CNS0095593	Slightly white alabastrum(diploid) 2	0.052
	CNS0095594	Slightly white alabastrum(diploid) 3	0.140
	CNS0095595	Whole white alabastrum(diploid) 2	0.877
	CNS0095596	Whole white alabastrum(diploid) 3	0.450
	CNS0095597	Whole white alabastrum(diploid) 4	0.188
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.044
	CNS0095600	Silvery flower (diploied) 3	0.050
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.520
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.287
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.830
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.641
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.320
	CRR073298	Stem 2	0.183
	CRR073299	Stem 3	0.101
	CRR073300	Leaf 1	0.307
	CRR073301	Leaf 2	0.303
	CRR073302	Leaf 3	0.352
	CRR073303	Juvenile bud 1	0.316
	CRR073304	Juvenile bud 2	0.431
	CRR073305	Juvenile bud 3	0.323
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.144
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.003
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000