Detail information of GWHGAAZE030102


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007042027.12.72518E-80B-box type zinc finger family protein [Theobroma cacao]
Swissprottr|C0SVM5|BBX19_ARATH4E-54B-box zinc finger protein 19 {ECO:0000303|PubMed:19920209}
trEMBLtr|A0A061E6F9|A0A061E6F9_THECC1E-80B-box type zinc finger family protein {ECO:0000313|EMBL:EOX97858.1}
TAIR10AT4G38960.34E-44B-box type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3829992938300781-
GWHAAZE00000009mRNA3829992938300781-
GWHAAZE00000009exon3829992938300066-
GWHAAZE00000009exon3830017438300389-
GWHAAZE00000009exon3830048638300601-
GWHAAZE00000009exon3830069138300781-
GWHAAZE00000009CDS3830069138300781-
GWHAAZE00000009CDS3830048638300601-
GWHAAZE00000009CDS3830017438300389-
GWHAAZE00000009CDS3829992938300066-
Transcript Sequence

Network for GWHGAAZE030102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.25zf-B_box19525.40E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE030102.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.421
SRR3591706second leaf38.827
SRR3591707mature leaf101.663
SRR3591708Shoot apex29.767
SRR3591709Stem52.705
SRR3591710White floral bud14.183
SRR3591711White flower27.664
SRR3591712Green floral bud10.260
SRR3591713Yellow flower31.660
SRP173429 SRR8316895Juvenile bud stage 12.578
SRR8316896Juvenile bud stage 14.706
SRR8316897Juvenile bud stage 10.231
SRR8316894Third green stage 5.894
SRR8316900Third green stage 11.459
SRR8316901Third green stage 11.059
SRR8316898Complete white stage 7.701
SRR8316899Complete white stage 30.639
SRR8316903Complete white stage 8.847
SRR8316902Silver flowering stage6.969
SRR8316904Silver flowering stage8.278
SRR8316905Silver flowering stage3.234
SRR8316906Gold flowering stage 21.406
SRR8316907Gold flowering stage 17.328
SRR8316908Gold flowering stage 25.137
SRP132670SRR6706286Control15.510
SRR6706287Light intensity 50%16.126
SRR6706288Light intensity 20%18.731
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.296
CNS0095593Slightly white alabastrum(diploid) 212.437
CNS0095594Slightly white alabastrum(diploid) 313.646
CNS0095595Whole white alabastrum(diploid) 211.835
CNS0095596Whole white alabastrum(diploid) 36.004
CNS0095597Whole white alabastrum(diploid) 48.876
CNS0095598Silvery flower (diploied) 115.487
CNS0095599Silvery flower (diploied) 230.495
CNS0095600Silvery flower (diploied) 316.396
CNS0095601Golden flower (diploid) 136.104
CNS0095602Golden flower (diploid) 226.661
CNS0095603Golden flower (diploid) 328.116
CNS0095604Slightly white alabastrum(tetraploid) 111.057
CNS0095605Slightly white alabastrum(tetraploid) 29.567
CNS0095606Slightly white alabastrum(tetraploid) 316.012
CNS0095607Whole white alabastrum(tetraploid) 17.799
CNS0095608Whole white alabastrum(tetraploid) 24.382
CNS0095609Whole white alabastrum(tetraploid) 39.015
CNS0095610Silvery flower (tetraploid) 112.659
CNS0095611Silvery flower (tetraploid) 214.192
CNS0095612Silvery flower (tetraploid) 31.760
CNS0095613Golden flower (tetraploid) 16.346
CNS0095614Golden flower (tetraploid) 217.311
CNS0095615Golden flower (tetraploid) 316.015
CRA001975CRR073297Stem 15.859
CRR073298Stem 24.836
CRR073299Stem 36.302
CRR073300Leaf 18.053
CRR073301Leaf 27.140
CRR073302Leaf 37.531
CRR073303Juvenile bud 19.960
CRR073304Juvenile bud 26.491
CRR073305Juvenile bud 37.353
CRR073306Third green 17.328
CRR073307Third green 26.850
CRR073308Third green 37.269
CRR073309Second white 16.609
CRR073310Second white 217.400
CRR073311Second white 314.826
CRR073312Silver flowering 17.836
CRR073313Silver flowering 27.570
CRR073314Silver flowering 35.586
CRR073315Gold flowering 11.254
CRR073316Gold flowering 21.562
CRR073317Gold flowering 31.993
CRR073318Tawny withering 17.899
CRR073319Tawny withering 26.125
CRR073320Tawny withering 35.346