Gene detail

Detail information of GWHGAAZE030190

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278408.1	PREDICTED: E3 ubiquitin-protein ligase UPL3 [Vitis vinifera]
Swissprot	tr\|Q6WWW4\|UPL3_ARATH	E3 ubiquitin-protein ligase UPL3
trEMBL	tr\|F6I105\|F6I105_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60621.1}
TAIR10	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	39294756	39306980	+
GWHAAZE00000009	mRNA	39294756	39306980	+
GWHAAZE00000009	exon	39294756	39295260	+
GWHAAZE00000009	exon	39295772	39296403	+
GWHAAZE00000009	exon	39296771	39296881	+
GWHAAZE00000009	exon	39296978	39297094	+
GWHAAZE00000009	exon	39298035	39298205	+
GWHAAZE00000009	exon	39298271	39298432	+
GWHAAZE00000009	exon	39298912	39299163	+
GWHAAZE00000009	exon	39299246	39299367	+
GWHAAZE00000009	exon	39299462	39300842	+
GWHAAZE00000009	exon	39302177	39303661	+
GWHAAZE00000009	exon	39304039	39304254	+
GWHAAZE00000009	exon	39304362	39304466	+
GWHAAZE00000009	exon	39305703	39305783	+
GWHAAZE00000009	exon	39305886	39305954	+
GWHAAZE00000009	exon	39306085	39306213	+
GWHAAZE00000009	exon	39306388	39306510	+
GWHAAZE00000009	exon	39306969	39306980	+
GWHAAZE00000009	five_prime_UTR	39294756	39295022	+
GWHAAZE00000009	CDS	39295023	39295260	+
GWHAAZE00000009	CDS	39295772	39296403	+
GWHAAZE00000009	CDS	39296771	39296881	+
GWHAAZE00000009	CDS	39296978	39297094	+
GWHAAZE00000009	CDS	39298035	39298205	+
GWHAAZE00000009	CDS	39298271	39298432	+
GWHAAZE00000009	CDS	39298912	39299163	+
GWHAAZE00000009	CDS	39299246	39299367	+
GWHAAZE00000009	CDS	39299462	39300842	+
GWHAAZE00000009	CDS	39302177	39303661	+
GWHAAZE00000009	CDS	39304039	39304254	+
GWHAAZE00000009	CDS	39304362	39304466	+
GWHAAZE00000009	CDS	39305703	39305783	+
GWHAAZE00000009	CDS	39305886	39305954	+
GWHAAZE00000009	CDS	39306085	39306213	+
GWHAAZE00000009	CDS	39306388	39306510	+
GWHAAZE00000009	CDS	39306969	39306980	+

Transcript Sequence
>GWHTAAZE030224 AATGCAAAACCACCCAACAACATCAATTCCCAATTCTTTCACGCGCATAAACATCAACACTTCCCCCAATTAGGGTTTGTTCTCTAACACGGGTTTCGAACTTTGGGGTTTTTACAATTAACAAAACAACCTCTCTCAACAAAGATCGCAAATTTTCCGGATTTAATTCCAAAACTAGGATTTAGAGGAGAAGATGAATTAGATACGTTAACAAGTTCCGGATCGGAAAGCGATTGATGAGCCAATTCGCTGGTTTGAGGGTTTTGTATGGAAACTCGTAGACGAAAGCGGGCCGAGGCCACCTCATCAGCCCCTTCTTCTTCCTCCACTGGTCCCACCACCCGTTCTACCAAGCGTACTCGTCTCGCCGCCACCGCCACAGTTGCCTCCACTTCTACACCTCAAGCTGCCGTTGTTTCATCGGTTTCGACTCGTTCACGCACTTCTCGCTCACAAGACTCCCTACCCTCCTCCACTCCGATGGACTCCACAAACGAGTCATCTGGTTCCCGTGGCCGGAGGGGAAAATCTGGTCAGGATAACTCCGACAAAGGGAAGGAGAAAGAGCATGATATTAGAAATAGGGAGAGAGATAGGGAAACAGAGAGGAACCTTGGGCTGAATATAGATTCTGGAGGCGGAGACGAAGACGATAACGATAGCGAAGGTGGCGGGGCTGGGATTTTGCATCAGAATTTAAATTTGAGTTCTGCTAACAGTGCACTTCAAGGGCTTTTAAGGAAATTGGGTGCTGGATTGGATGATCTTCTTCCTTCTTCAGCAATGGGATCGGCTTCGTCTTCACATCAGAATGGGCGCCTCAAGAAGATTTTATCTGGATTGCGTGCTGATGGTGAGGAAGGGAAGCAAGTGGAGGCTTTGACTCAGTTATGTGAGATGTTATCAATTGGGACAGAGGATTCACTTAGTACATTTTCAGTGGACTCATTTGTTCCAGTGCTTGTGGGGTTGCTTAACCACGAGAGCAATCCTGATATTATGCTTCTTGCAGCTAGGGCACTGACCCATTTGTGTGATGTGTTACCGTCCTCGTGTGCTGCTGTTGTGCATTATGGTGCAGTTTCTTGTTTTGTTGCTCGGCTGCTTACAATTGAGTACATGGACTTGGCGGAACAGTCTCTGCAAGCTCTAAAGAAGATATCTCTGGAGCACCCCACTGCTTGCTTGCGAGCAGGCGCACTTATGGCAGTGCTTTCATATCTTGACTTCTTTTCCACAGGAGTCCAGCGAGTGGCACTGTCTACTGCTGCAAATATGTGCAAGAAACTCCCTTCGGATGCAGCAGACTTTGTGATGGAAGCTGTTCCTTTGTTGACAAATCTTCTTCAGTATCATGATGAAAAGGTTCTAGAGCATGCTTCGGTTTGCTTGACTCGGATTGCAGAGGCATTTGCATCATCTCCTGATAAGCTAGATGAACTCTGCAACCATGGATTGGTTACGCAAGCAGCCTCACTCATTTCGACCAGTAGTTCTGGAGGTGGTCAAGCTTCCCTCAGCACATCTACTTACACGGGTTTGATCCGATTGCTTTCAACATGTGCAAGTGGCTCCCCACTAGGAGCAAAAACTTTGTTACTCCTGGGGATCAGTGGCATTCTTAAAGATATACTATCGGGTTCTGGCCTTGTTGCAAGCCTGTCTGTCTCAGCTGCATTAAGTAGACCACCAGAGCAGATTTTTGAAATTATGAACCTAGCAAATGAGCTTCTTCCCCCACTGCCTCAAGGGACCATCTCTCTTCCAGCAAGCACTAACTTATTTGTTAAAGGGTCTCCTTTTAATAAGAAGTCTACCGTTGGCAATTCTGGCAAACAAGAAGATTCTAATGGCGATGTAGCTGAGGTTTCACCTCGAGAGAAACTACTAAACGACCAGCCTCAGCTTCTACAGCAGTTTGGGATGGACCTTCTTCCTGTTTTAATACAGATATATGGATCCAGTGTAAATGGCCCTGTTCGCCATAAATGTCTCTCAGTGATCGGAAAGCTTATGTACTTCAGCACTGCAGATATGATTGAGTCTTTATTAAATGTGACGAACATATCTAGTTTCCTAGCCGGGGTTTTAGCATGGAAAGATCCACAGGTCTTGGTGCCTGCCCTTCAAATAGCGGAAATTCTAATGGAAAAGCTTCCGGAAATTTTCTCGAAGATGTTTGTGAGAGAAGGTGTTGTTCACGCAGTAGATACGCTAATTATATCTGGCTCATCTAGTACAACCGTTTTGCAACCTGACAAGGATAATGATTCTATAACGGGAACATCATCACGTTCTAGGCGATATCGACGGCGTGGCGGTAACTCAAATTCAGATGTAAATTCTACTGAAGATTCTAAAATTCCTGTTCCAACTATAGGTTCACCTCCAAATTCAGTAGAAATTCCGAATGTTAATTCTAGTCTTCGCATGTCAGTAAGTACTTGTGCCAAATCTTTCAAAGATAAATACTTCCCTTCGGATCCTGGTTCTGCTGAAGCTGGTGTTACTGATGATCTTCTACACCTGAAGAATCTTTGCACAAAATTGAATGCCGGTCTTGATGATCGAAAGACTAAATCAAAGGGAAAATCTAAGGCTTCGGGTTCACGCTTTCCCAATATTTCTGCCAGTAAAGAGGAGAATTTGAGTTCTGTGGTTTCCGAGATGTTAGCGGAGCTAAGCAAAGGGGATGGAGTATCCACTTTTGAGTTCATCGGTAGTGGAGTTGTCACTGCTTTACTTACCTACTTCTCTTGCGGATACTTTACCAAAGATAAAATTTCAGAAGCAAATCTTCCTAAGCTTCGACAACAAGCAATAAGAAGATATAAGTCGTTCGTTGCTATTGCACTTCCTTCAAGCGTTGATGAAGGTGATGTTGCCCCTATGAGTGTTTTAGTTCAAAAGCTTCAAAACGCTTTGTCCTCTTTGGAACGGTTTCCTGTTGTACTGAGCCCCAATTCTAGGTCATCTAGTGGTGGTGCACGTCTCTCGTCTGGGCTAAGCGCATTATCTCAGCCACTCAAGCTTCGTCTTTGTAGAGCACCAGGAGAAAAAGCTCTTCGCGATTATTCTACGAATATCTTACTGATCGATCCTTTAGCAAGTTTAGCTGCCGTTGAAGAGTTTATGTGGCCTCGACTTGAACGAAGTGAGTCGGGGGAGAAGATTTCTGCCTCTGCAGGGAACTCTGAGTCTACTTCTACTCCTGGTTCGACCACTCGTCGCCCTTCTACAAGATCCAGGTCTTCTATTAATATAGGAGAGACGGTAAAAAAAGAGTCGTTACAAGAAAAAAACTTGACCTCATCCAAGGGTAAGGGAAAAGCTATTCTGAAGCCAGCTTCAGAGGAGGGTAGAGGTCCTCAGACAAGAAATGCTGCTCGTAGAAGAGCAGCTCTGGATAAAGATGCAGAAATGAAGCCTGTACATGGTGATTCTAGTTCTGAGATGCTAAGAGATGAATCTCTTCCCATCTGCGTGCCAGACAAAGTGCACGATGTTAAATTGGCGGACCCTGGTGAGGATAGTCCTGTTGCCCCTACAAGTGATAGCCATACCAATCCCGCTTCTGGTTCTAGCAGCAGAGCCACTATGGTTGGGGGCTCAGATTCTGCAGATATTAGGAGCGGGAACACTTTCGGTTCAAGGGGTTCAATGTCATTTGCAGCTGCTGCTATGGCTGGGCTTGCTTCTGCAAACGGTAGAGGCATTAGAGGAGGGAGAGATCGCCAGGGTCGATCCCTATTCGGGTCTAATGATCCTCCTAAGCTAATATTTTCTGCAGGTGGGAAGCAACTTAATAGAAATTTGACAGTCTATCAAGCCACTCAGCGTCAACGCGTCCTCGATGAGGATGATGACGAGAGGAATGCGGGCTCCGATTTTGTATCTAGTGATGGAAGCAGGCTTTGGGGCGATATCTGTACCATCACATATCAAAGGGCAGATGCCCCAGTTGATAGGGCTTCAGTTGGGACACCGAGTTCTGCCACCCCTTCTAAATCTGCAAAAGCAAGTTCTACATCACTCTTAGATAGCCTTTTGCAAGGGGAACTTCCTTGTGATCTAGAAAAAAACAATCCTACTTATAACATATTGGCCCTATTGCGTGTATTAGAGGGGTTGAATCAGCTTGCTCCTCGTTTAAGAGTACAGGCAATGATGGACTGCTTCTCCGAGGACAAGATTTCAAATCTAGACAAGTTCAATACGACTGGTGTTAGGGTTCCTCATGAGGAGTTCATAAATAGTAAGCTCACTCCAAAATTGGCTCGACAGATCCAAGACGCACTCATACTTTGCAGTGGGAGCCTTCCATCATGGTGTTACCAGTTGACTAAAGCGTGTCCTTTCCTGTTCCCTTTCGAGACCCGCCGTCAGTATTTCTATTCCACTGCTTTTGGGTTGTCTCGGGCATTGCATCGGCTCCAGCAGCAGCAAGGTGCAGATGGTCATGGATCAATGAATGAGAGAGAGGTGAGAGTTGGGAGATTACAGCGTCAGAAAGTTCGTGTCTCCCGGAATCGGATTCTGGATTCTGCTGTAAAAGTTATGGAAATGTATTCTAGCCAAAAGGCAGTGCTGGAAGTAGAATATTTCGGAGAAGTTGGGACGGGATTGGGGCCCACCCTCGAGTTCTACACCCTTTTGAGCCATGATTTACAGAAAGTTGGATTGGAAATGTGGAGGTCAAATTCGACGTTAGACAAGTCTGAAATGGAAATTGATGTAGATAGAGATTTTATCCAAGCACCGCTTGGGTTGTTCCCCCGTCCTTGGACTCCAAATGCAGATACTTGTGACGGTAGCCAATTATCTAAGGTCATCGAATACTTCCGGCTGCTTGGGCGCGTTATGGCCAAAGCACTTCAAGATGGTCGGCTTTTGGATCTGCCATTGTCGGTCGCATTTTATAAGCTTGCGCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTCATTTGATGCTGAATTTGGGAAGACTTTGCAAGAATTACAAGCCCTTGTTTGCCGGAAACAATACCTCGAATCAATTGGTGGTGATGAAATTGCCGAATTATGTTTCCGTGGGATTCCAATTGGAGATCTCTTTTTGGATTTCACACTTCCTGGATATCCTGATTACATTCTGAAACCTGGCAATGAGAATGTGGATGTAAATAATTTGGAGGACTACATTTCCCTGGTGGTTGATGCTACTGTGCGAACTGGGATCGCGAGGCAAATAGAAGCATTTAGATCCGGGTTTAATCAGGTCTTTGATATCTCAACTCTGCAAATATTTTCTGCTATGGAGCTTGACTATTTGCTCTGCGGTCGTAGAGAGTTGTGGGAGCCCGAGTCACTTGTGGACCACATTAAGTTTGATCACGGGTATACTGCCAAGAGTCCTGCAATTCTTAACTTGCTTGAGATTATGGGGGAATTCAGCCCGGAACAGCAACGGTCATTCTGTCAATTTGTCACTGGTGCACCCCGCCTTCCTCCTGGTGGTTTAGCAGTGCTTAACCCGAAGTTGACAATTGTGAGAAAGCATTCTTCTACGGCCAGCAACACAACAACCAATGGGAGTGGGCTGTCTGAATCTGCAGATGATGATTTGCCTAGTGTGATGACATGCGCGAATTACCTTAAGCTTCCTCCATACTCTACCAAGGTTGATCCATGA

Network for GWHGAAZE030190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00632.26	HECT	1491	1798	8.30E-70

Protein Sequence

>GWHPAAZE030208
METRRRKRAEATSSAPSSSSTGPTTRSTKRTRLAATATVASTSTPQAAVVSSVSTRSRTSRSQDSLPSSTPMDSTNESSGSRGRRGKSGQDNSDKGKEKEHDIRNRERDRETERNLGLNIDSGGGDEDDNDSEGGGAGILHQNLNLSSANSALQGLLRKLGAGLDDLLPSSAMGSASSSHQNGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQSLQALKKISLEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDEKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTSTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGLVASLSVSAALSRPPEQIFEIMNLANELLPPLPQGTISLPASTNLFVKGSPFNKKSTVGNSGKQEDSNGDVAEVSPREKLLNDQPQLLQQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTADMIESLLNVTNISSFLAGVLAWKDPQVLVPALQIAEILMEKLPEIFSKMFVREGVVHAVDTLIISGSSSTTVLQPDKDNDSITGTSSRSRRYRRRGGNSNSDVNSTEDSKIPVPTIGSPPNSVEIPNVNSSLRMSVSTCAKSFKDKYFPSDPGSAEAGVTDDLLHLKNLCTKLNAGLDDRKTKSKGKSKASGSRFPNISASKEENLSSVVSEMLAELSKGDGVSTFEFIGSGVVTALLTYFSCGYFTKDKISEANLPKLRQQAIRRYKSFVAIALPSSVDEGDVAPMSVLVQKLQNALSSLERFPVVLSPNSRSSSGGARLSSGLSALSQPLKLRLCRAPGEKALRDYSTNILLIDPLASLAAVEEFMWPRLERSESGEKISASAGNSESTSTPGSTTRRPSTRSRSSINIGETVKKESLQEKNLTSSKGKGKAILKPASEEGRGPQTRNAARRRAALDKDAEMKPVHGDSSSEMLRDESLPICVPDKVHDVKLADPGEDSPVAPTSDSHTNPASGSSSRATMVGGSDSADIRSGNTFGSRGSMSFAAAAMAGLASANGRGIRGGRDRQGRSLFGSNDPPKLIFSAGGKQLNRNLTVYQATQRQRVLDEDDDERNAGSDFVSSDGSRLWGDICTITYQRADAPVDRASVGTPSSATPSKSAKASSTSLLDSLLQGELPCDLEKNNPTYNILALLRVLEGLNQLAPRLRVQAMMDCFSEDKISNLDKFNTTGVRVPHEEFINSKLTPKLARQIQDALILCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQQGADGHGSMNEREVRVGRLQRQKVRVSRNRILDSAVKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLEMWRSNSTLDKSEMEIDVDRDFIQAPLGLFPRPWTPNADTCDGSQLSKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLALGQELDLHDILSFDAEFGKTLQELQALVCRKQYLESIGGDEIAELCFRGIPIGDLFLDFTLPGYPDYILKPGNENVDVNNLEDYISLVVDATVRTGIARQIEAFRSGFNQVFDISTLQIFSAMELDYLLCGRRELWEPESLVDHIKFDHGYTAKSPAILNLLEIMGEFSPEQQRSFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTASNTTTNGSGLSESADDDLPSVMTCANYLKLPPYSTKVDP

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	pathway	mapID
K10590	TRIP12	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.024
	SRR3591706	second leaf	26.226
	SRR3591707	mature leaf	30.460
	SRR3591708	Shoot apex	29.563
	SRR3591709	Stem	37.676
	SRR3591710	White floral bud	53.545
	SRR3591711	White flower	74.491
	SRR3591712	Green floral bud	36.240
	SRR3591713	Yellow flower	60.221
SRP173429	SRR8316895	Juvenile bud stage	22.352
	SRR8316896	Juvenile bud stage	34.012
	SRR8316897	Juvenile bud stage	16.050
	SRR8316894	Third green stage	14.315
	SRR8316900	Third green stage	32.069
	SRR8316901	Third green stage	32.024
	SRR8316898	Complete white stage	13.022
	SRR8316899	Complete white stage	34.626
	SRR8316903	Complete white stage	35.938
	SRR8316902	Silver flowering stage	27.666
	SRR8316904	Silver flowering stage	46.404
	SRR8316905	Silver flowering stage	18.976
	SRR8316906	Gold flowering stage	61.555
	SRR8316907	Gold flowering stage	61.410
	SRR8316908	Gold flowering stage	71.328
SRP132670	SRR6706286	Control	32.285
	SRR6706287	Light intensity 50%	33.716
	SRR6706288	Light intensity 20%	35.156
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.306
	CNS0095593	Slightly white alabastrum(diploid) 2	14.088
	CNS0095594	Slightly white alabastrum(diploid) 3	16.352
	CNS0095595	Whole white alabastrum(diploid) 2	13.443
	CNS0095596	Whole white alabastrum(diploid) 3	10.898
	CNS0095597	Whole white alabastrum(diploid) 4	13.154
	CNS0095598	Silvery flower (diploied) 1	22.334
	CNS0095599	Silvery flower (diploied) 2	21.364
	CNS0095600	Silvery flower (diploied) 3	68.838
	CNS0095601	Golden flower (diploid) 1	20.806
	CNS0095602	Golden flower (diploid) 2	67.459
	CNS0095603	Golden flower (diploid) 3	66.946
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.764
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.883
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.222
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.701
	CNS0095610	Silvery flower (tetraploid) 1	81.545
	CNS0095611	Silvery flower (tetraploid) 2	72.321
	CNS0095612	Silvery flower (tetraploid) 3	64.914
	CNS0095613	Golden flower (tetraploid) 1	32.618
	CNS0095614	Golden flower (tetraploid) 2	61.892
	CNS0095615	Golden flower (tetraploid) 3	90.060
CRA001975	CRR073297	Stem 1	38.287
	CRR073298	Stem 2	34.377
	CRR073299	Stem 3	27.954
	CRR073300	Leaf 1	38.615
	CRR073301	Leaf 2	33.003
	CRR073302	Leaf 3	25.712
	CRR073303	Juvenile bud 1	28.425
	CRR073304	Juvenile bud 2	22.243
	CRR073305	Juvenile bud 3	44.475
	CRR073306	Third green 1	28.686
	CRR073307	Third green 2	17.829
	CRR073308	Third green 3	29.541
	CRR073309	Second white 1	25.091
	CRR073310	Second white 2	36.136
	CRR073311	Second white 3	48.882
	CRR073312	Silver flowering 1	49.481
	CRR073313	Silver flowering 2	58.848
	CRR073314	Silver flowering 3	49.743
	CRR073315	Gold flowering 1	10.402
	CRR073316	Gold flowering 2	23.050
	CRR073317	Gold flowering 3	12.904
	CRR073318	Tawny withering 1	27.637
	CRR073319	Tawny withering 2	23.655
	CRR073320	Tawny withering 3	23.901