Gene detail

Detail information of GWHGAAZE030195

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009791634.1	0	PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]
COG	YP_001865069.1	4E-17	hypothetical protein Npun_F1419
Swissprot	tr\|O22468\|MSI2_ARATH	0	WD-40 repeat-containing protein MSI2
trEMBL	tr\|K4B421\|K4B421_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g111590.2.1}
TAIR10	AT2G16780.1	1E-168	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	39345553	39350558	-
GWHAAZE00000009	mRNA	39345553	39350558	-
GWHAAZE00000009	exon	39345553	39345757	-
GWHAAZE00000009	exon	39346878	39346973	-
GWHAAZE00000009	exon	39347856	39347980	-
GWHAAZE00000009	exon	39348940	39349083	-
GWHAAZE00000009	exon	39349205	39349528	-
GWHAAZE00000009	exon	39350250	39350558	-
GWHAAZE00000009	CDS	39350250	39350558	-
GWHAAZE00000009	CDS	39349205	39349528	-
GWHAAZE00000009	CDS	39348940	39349083	-
GWHAAZE00000009	CDS	39347856	39347980	-
GWHAAZE00000009	CDS	39346878	39346973	-
GWHAAZE00000009	CDS	39345553	39345757	-

Transcript Sequence
>GWHTAAZE030229 ATGGGAGAGAGAGAAGAAGCCGGTGGAGTTGATCAGGTGGAGGAAGAGTTCAGCGTATGGAGAAAGAACACTCCTTTCTTGTACGATCTCATCATTTCTCACGCTCTCGAGTGGCCTTCTCTTACCGTCCAGTGGCTCCCTTCGCCGCCGTCTCCTTACGGCGACGGTACTTTTGCCGGACACAAGCTGATCCTTGGGACCCACACGGCCGATGACGTTCCTAACTTCCTTCTCGTCGCAGATGTTCATCTGCCCTGCAACCCTGCCACCGCCATTGAAACTAGTCTCGAAACCCCTGAAATTCCTAAGGTGGAGATATCTCAGACTATATATGTTGATGGAGAGGTGAATAGAGCACGGTGTATGCCACAAAACCCATCTCTTATTGCAGCAAAGACTAGCGGCTCTGAGGTTTATGTATTTGACTGTACAAAACAGCCCATGAATCAAGAAGGCGGTTCTTGTGATCCTGACTTGAAATTGAGAGGCCATGATAAAGAAGGGTATGGGCTTTCGTGGAGCCCCTTTAAAGAGGGGTACCTTTTGAGTGGTTCAAATGACCACAAAATTTGTGTGTGGGATGTGTCCTCAATGCCTCGAGATAAAGTGCTCGAGGCAAAATATGTCTTTGAGGATCATGGAAGCGTGGTTGAGGATGTATCATGGCACTCGATGAATGAAAATTTATTTGGTTCTGTTGGGGATGATTGTAGGCTAATGATCTGGGATTTGCGCACAAACAAACCCCAACAATCTGTTGTAGTTCATGAAAAGGAGGTGAACTATTTATCTTTCAATCCATTTAATGAATGGGTTGTGGCTACAGCATCTTCAGATACTACTGTTGGTTTGTTCGACACAAGAAAGATGACTTCACCGTTGCATGTTTTGAGTGGTCATACAGAGGAGGTATTCCAGGTAGAATGGGATCCAAATCATGAAACAGTGCTAGCTTCTTCTGCTGATGACAGAAGGTTGATGGTTTGGGACCTCAACAGGATTGGAGATGAGCAGCTGGAAGGAGAAGCTGAAGATGGCCCGCCGGAGCTTTTATTTTCCCATGGTGGTCACAAAGCTAAAATTTCAGATTTCTCATGGAACAAGAACGAACCATGGGTCATTTCAAGCGTAGCCGAAGACAATACTCTTCAAGTGTGGCAGATGGCTGAAAGTATATATCGCGATGATGAGGACGATGTGTGA

Network for GWHGAAZE030195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12265.9	CAF1C_H4-bd	15	86	2.40E-23
PF00400.33	WD40	161	194	0.15
PF00400.33	WD40	208	243	0.05
PF00400.33	WD40	248	286	0.037
PF00400.33	WD40	292	330	7.50E-06
PF00400.33	WD40	351	386	0.0012

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.659
	SRR3591706	second leaf	15.501
	SRR3591707	mature leaf	17.282
	SRR3591708	Shoot apex	76.162
	SRR3591709	Stem	41.502
	SRR3591710	White floral bud	29.768
	SRR3591711	White flower	47.019
	SRR3591712	Green floral bud	41.689
	SRR3591713	Yellow flower	26.435
SRP173429	SRR8316895	Juvenile bud stage	27.670
	SRR8316896	Juvenile bud stage	41.752
	SRR8316897	Juvenile bud stage	24.781
	SRR8316894	Third green stage	14.637
	SRR8316900	Third green stage	46.013
	SRR8316901	Third green stage	36.086
	SRR8316898	Complete white stage	14.137
	SRR8316899	Complete white stage	69.674
	SRR8316903	Complete white stage	18.219
	SRR8316902	Silver flowering stage	11.719
	SRR8316904	Silver flowering stage	13.283
	SRR8316905	Silver flowering stage	6.789
	SRR8316906	Gold flowering stage	18.160
	SRR8316907	Gold flowering stage	15.869
	SRR8316908	Gold flowering stage	40.648
SRP132670	SRR6706286	Control	32.110
	SRR6706287	Light intensity 50%	33.834
	SRR6706288	Light intensity 20%	42.653
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.989
	CNS0095593	Slightly white alabastrum(diploid) 2	34.851
	CNS0095594	Slightly white alabastrum(diploid) 3	30.156
	CNS0095595	Whole white alabastrum(diploid) 2	28.357
	CNS0095596	Whole white alabastrum(diploid) 3	23.987
	CNS0095597	Whole white alabastrum(diploid) 4	20.144
	CNS0095598	Silvery flower (diploied) 1	30.672
	CNS0095599	Silvery flower (diploied) 2	33.407
	CNS0095600	Silvery flower (diploied) 3	26.385
	CNS0095601	Golden flower (diploid) 1	21.381
	CNS0095602	Golden flower (diploid) 2	24.532
	CNS0095603	Golden flower (diploid) 3	25.977
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.126
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.273
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.302
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.467
	CNS0095610	Silvery flower (tetraploid) 1	47.653
	CNS0095611	Silvery flower (tetraploid) 2	45.840
	CNS0095612	Silvery flower (tetraploid) 3	38.141
	CNS0095613	Golden flower (tetraploid) 1	22.597
	CNS0095614	Golden flower (tetraploid) 2	33.679
	CNS0095615	Golden flower (tetraploid) 3	12.502
CRA001975	CRR073297	Stem 1	41.158
	CRR073298	Stem 2	40.280
	CRR073299	Stem 3	49.667
	CRR073300	Leaf 1	42.510
	CRR073301	Leaf 2	42.029
	CRR073302	Leaf 3	47.371
	CRR073303	Juvenile bud 1	50.858
	CRR073304	Juvenile bud 2	36.029
	CRR073305	Juvenile bud 3	54.535
	CRR073306	Third green 1	17.091
	CRR073307	Third green 2	15.014
	CRR073308	Third green 3	13.977
	CRR073309	Second white 1	13.917
	CRR073310	Second white 2	10.934
	CRR073311	Second white 3	6.612
	CRR073312	Silver flowering 1	5.515
	CRR073313	Silver flowering 2	9.039
	CRR073314	Silver flowering 3	3.864
	CRR073315	Gold flowering 1	37.136
	CRR073316	Gold flowering 2	49.115
	CRR073317	Gold flowering 3	39.074
	CRR073318	Tawny withering 1	56.401
	CRR073319	Tawny withering 2	46.422
	CRR073320	Tawny withering 3	58.483