Gene detail

Detail information of GWHGAAZE030222

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088654.1	0	PREDICTED: mechanosensitive ion channel protein 6-like [Sesamum indicum]
COG	YP_003167824.1	3E-12	WD-40 repeat-containing protein
Swissprot	tr\|F4IME2\|MSL8_ARATH	0	Mechanosensitive ion channel protein 8
trEMBL	tr\|A0A068V1T5\|A0A068V1T5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313\|EMBL:CDP14532.1}
TAIR10	AT4G35140.1	2E-168	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40133978	40149974	-
GWHAAZE00000009	mRNA	40133978	40149974	-
GWHAAZE00000009	exon	40149344	40149974	-
GWHAAZE00000009	exon	40148551	40149130	-
GWHAAZE00000009	exon	40146943	40147066	-
GWHAAZE00000009	exon	40146483	40146776	-
GWHAAZE00000009	exon	40146166	40146368	-
GWHAAZE00000009	exon	40145407	40145728	-
GWHAAZE00000009	exon	40138866	40138991	-
GWHAAZE00000009	exon	40137556	40137807	-
GWHAAZE00000009	exon	40136647	40136790	-
GWHAAZE00000009	exon	40135676	40136368	-
GWHAAZE00000009	exon	40135490	40135545	-
GWHAAZE00000009	exon	40133978	40134200	-
GWHAAZE00000009	CDS	40149344	40149974	-
GWHAAZE00000009	CDS	40148551	40149130	-
GWHAAZE00000009	CDS	40146943	40147066	-
GWHAAZE00000009	CDS	40146483	40146776	-
GWHAAZE00000009	CDS	40146166	40146368	-
GWHAAZE00000009	CDS	40145407	40145728	-
GWHAAZE00000009	CDS	40138866	40138991	-
GWHAAZE00000009	CDS	40137556	40137807	-
GWHAAZE00000009	CDS	40136647	40136790	-
GWHAAZE00000009	CDS	40135676	40136368	-
GWHAAZE00000009	CDS	40135490	40135545	-
GWHAAZE00000009	CDS	40133978	40134200	-

Transcript Sequence
>GWHTAAZE030256 ATGCCTGCCGTAACTGAAAGTCCTATAAATAATGATAGAGTTTCGAATACTAGAGAAATGAAAGTTTCATTTCAAGATATTGAGCATGAACAAACTGAAAAAAGGAGTGTAGATTCATCGGATGAGGATGACATTACACGACCATATCAAAGTAGGAGGAGGGTCTTGAATATGTCCCCTACGGCGGATGGTATGGTTACTGGTGAGGTTTTGAGGTGTACGTCGTTTCAGAGGAGAGCAAGTAATTTGAGAATGAAGACACGGTCAAGGCTAATGGACCCGCCTCCTCAGTATTCAGACTCGATGTCTGGAAGAGTGGGCAAGTCGGGTCCAATGAAGTCAGGGAGATTGGGGAAATCTGGATTCCTAGGAAGGGTGTCTGGGATGTTATCGAAACCAATGGATGATGATGAAAATGATTCCTTGTTCGAAGAGGATATTCCTGACGAGTTTATGAGGAGTAAACTTGATGCATTGACTCTACTCCAGTGGATTAGTCTTATTTTGATTGTCGCAGCTTTGATTAGTACTCTTACAATTCGTGTCTGGAAAAGAAAAAGGATTTATGGACTTGCTTTATGGAAATGGGAGGTTTTAGTTCTTGTTTTGATATGTGGCCGGTTGGTGTCAGTGGCTTCATTGATATGGCTAGTGAAGACCCTCATGGTTAAGGTCCTTGCCTCTTCCTTCCATGTGAGCACTTTCTTTGATCGAATTCAGGATTCAGTGTTTAATCAATATGTGATTGAGACGCTATCTGGTCCTCCTTTAATTGAAATACGGAGCATCCAAGAAGAAGAGGAGAGGACAGTGGCTGAGGTTACAAAACTTGAGAAAGCAGGGGCTGTGTTGCCCCCAGAACTAAGGACAACTGCCCTCGAAACAAACTCAAGGAATGGGAGAGTGATAGGGAGTGGTGGCCTTAAAAAGATAATCAGTGGCACAAGCTTGAAGCATTCTGATGTTATCTCTAAGAAACTAGATGAGGGGATAATGATTGAGCACTTGCATAAACTGAACCCAGAGAATGTCTCTGCGTGGAACATGAAGAGGCTAATGAAAATTGTTCGACATGGATTTATGTCTACCCTTGATGAGCAGATACTGAATTCGACACAGGAGGATGAATCTAACACGGAGATTAGAAGTGAATTCGAAGCAAAGGTTGCTGCAAGGAAGATATTTCGTAATGTGGCTAGACCTCGGTCCAAGTTCATCTATATGGAAGACCTGATGCGTTTCTTGCAACAAGAAGAGGCTTTGAAGACCATGACTCTCTTGGAAGGATCAGCTGACGGTGAAAAAATCAGCAAGCCTGCCCTGAAGAACTGGGTGGTCAATGCTTTTAGAGAACGAAAGGCGCTTGCCCTGACTCTCAATGATACAAAAACAGCCGTAAAGAAGCTTCATCAGATGGTGAATGTCTTAGTTGGCATTATCACACTGATTATTTGTCTCGTAATACTAGGAATCGCGACGACCAAATTTCTACTTTTTGTAAGCTCTCAGGTTGTTGTTGTGGCTTTTATATTTGGAAACACCTGCAAGCAGATATTTGAAGCTATCATCTTTGTATTTGCAATGCACCCATTTGATGTGGGTGATCGGTGCGAGATTGATGGAGTTCAGATGGTTGTGGAAGAGATGAATATATTGACTACAGTCTTTTTGAAATTTGACAACCTGAAGATTATATATCCGAATAGTACTCTTGCAACGAAACCTATTAGTAATTATTATCGTAGCCCTGATATGGGAGATGCAGTTGATTTCTTCATCCATATCGCTACTCCAAAAGAGAAGATCGAAATCATGAAGAAAAGAATTACAAGTTACATTGAGGAAACAACGGACCACTGGTACGCGGATCCAATGGTGGTGCTAATGAACATCGAGGATCTAAACAAGATGAAAATGTCAGTATGGCTAAGGCACAAAATGAACCACCAAGACATGGGAGAGAGGTGGTTGAGGCGGGCCCTTTTAGTTGATGAGATGATCAGAATCTTCAAAGACATGGGCATTGAATACCGTTTGTACCCCATTGACATCAACGTTTGCTCAATGCCAAATGTCCACTCCACGCGCCTCCCTCCCGCGTGGTCAAATTCCTCTCAACATGTAAGAAAATCCGAGAGTACCCCAAGCCTCGAGAGGATGAGAAAGAGGGGGAGAACAAGCAGCAGCAGCAGCTTAGATTCGGCGATTGTGAATGTTTGGCAACGAGAGGTCGGCCACCTCTCTACCCGAAACTTCGCTCACCTCTTTGCCGCCTCCCAGGACCTTGTGCTTAGACTTGATCTCTATGCAAATCTGGATAAACACAGAGGGTGTGTAAACACTGTTAGCTTCAATGCAGATGGTGATATACTGGTTTCAGGCTCTGATGATAGGAGGGTCATACTTTGGAATTGGGAAACAGGGCGTGTTAAACTCTCCTTCCATTCTGGTCATAACAACAACGTTTTCCAGGCAAAGATCATGACTTGCACTGATGATCGAAGCATTGTCACCTGTGCTGCTGATGGCCAGGTAAGACATGCTCAGATTCTAGAACGTGGTCAAGTGGAGACTAAATTACTTGCAAAGCATCAAGGTCGAGCTCATAAGCTGGCAATTGAACCTGGGAGCTCTCATATATTTTATACTTGTGGTGAAGATGGACTGGTTCAGCACTTTGATCTGAGAACTGCAGCTGCTACAGAACTTTTTACATGCCAGTCTATCCGAGATAGGGCTTCCATGCCAATTGTTAATCTGAATGCCATAACGATTGATCCAAGGAACCCCAATTTGTTTGCAGTTGCAGGGTCAGACGAATATGCTAGACTCTACGATATCCGGATGTACAAGTGGGACGCCTCAAATAATTTTGGTCAGCCAACCGACTGTTTCTGCGCCCCAAATTTAATTGGTGATAAGCAAGTGGGGATAACAGGATTGGCATTCTCAGATCAGAGCGAACTTCTTGTTTCGTACAATGACGAGTGCATCTATCTTTTTTCGAGGGATATGGGATTGGGACCCAACCCACAGTCTAATGAATCTCCTTCATATATGGAAACTGATGGTCAAGTTTGTCCCCAAGTCTACAAGGGGCACAGAAATTGTGAGACGGTGAAGGGGGTGAACTTCTTTGGCCCTAAATGCGAGTACGTTGTGAGTGGTTCAGACTGTGGGCGGATTTTCATTTGGAAGAAGAAGGGTGGTGAACTCATTCGTGTTATGGAAGCAGATAAGTATGTAGTGAACTGTATCGAGTCTCATCCTCATACAACTGCCCTTGCCAGCAGTGGAATTGAGAATGACATTAAGATATGGACACCAAAAGCCATCGAGAAAGCTAAACTGCCTGAAAATATTGAAAAGGAACTACATGAACCATGCAAGAATTTGTGTCTCAATGGTTGGAAAGGAACCACGAGGGGCTGGATTTACCGAATGGCTTCTTCACCTGAGGATTTGATGTTGCAATTTTTCTCGATGCAAAGGCGGCGTAGGAGGACAAGTCCAGAGAGCGATGGAGAGAATTCGTCAGCAGGGCAAGAACTGCTAGAGCTTATTCTAACAATTAACACCAATACAGATGGTTCATCTGATGATGATGGTGGAGACAATACTTCGAATGTCGATGATCTTTTCGACTAA

Network for GWHGAAZE030222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00924.19	MS_channel	471	676	1.60E-23
PF00400.33	WD40	773	804	7.30E-05
PF00400.33	WD40	1027	1066	0.089

Protein Sequence

>GWHPAAZE030240
MPAVTESPINNDRVSNTREMKVSFQDIEHEQTEKRSVDSSDEDDITRPYQSRRRVLNMSPTADGMVTGEVLRCTSFQRRASNLRMKTRSRLMDPPPQYSDSMSGRVGKSGPMKSGRLGKSGFLGRVSGMLSKPMDDDENDSLFEEDIPDEFMRSKLDALTLLQWISLILIVAALISTLTIRVWKRKRIYGLALWKWEVLVLVLICGRLVSVASLIWLVKTLMVKVLASSFHVSTFFDRIQDSVFNQYVIETLSGPPLIEIRSIQEEEERTVAEVTKLEKAGAVLPPELRTTALETNSRNGRVIGSGGLKKIISGTSLKHSDVISKKLDEGIMIEHLHKLNPENVSAWNMKRLMKIVRHGFMSTLDEQILNSTQEDESNTEIRSEFEAKVAARKIFRNVARPRSKFIYMEDLMRFLQQEEALKTMTLLEGSADGEKISKPALKNWVVNAFRERKALALTLNDTKTAVKKLHQMVNVLVGIITLIICLVILGIATTKFLLFVSSQVVVVAFIFGNTCKQIFEAIIFVFAMHPFDVGDRCEIDGVQMVVEEMNILTTVFLKFDNLKIIYPNSTLATKPISNYYRSPDMGDAVDFFIHIATPKEKIEIMKKRITSYIEETTDHWYADPMVVLMNIEDLNKMKMSVWLRHKMNHQDMGERWLRRALLVDEMIRIFKDMGIEYRLYPIDINVCSMPNVHSTRLPPAWSNSSQHVRKSESTPSLERMRKRGRTSSSSSLDSAIVNVWQREVGHLSTRNFAHLFAASQDLVLRLDLYANLDKHRGCVNTVSFNADGDILVSGSDDRRVILWNWETGRVKLSFHSGHNNNVFQAKIMTCTDDRSIVTCAADGQVRHAQILERGQVETKLLAKHQGRAHKLAIEPGSSHIFYTCGEDGLVQHFDLRTAAATELFTCQSIRDRASMPIVNLNAITIDPRNPNLFAVAGSDEYARLYDIRMYKWDASNNFGQPTDCFCAPNLIGDKQVGITGLAFSDQSELLVSYNDECIYLFSRDMGLGPNPQSNESPSYMETDGQVCPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADKYVVNCIESHPHTTALASSGIENDIKIWTPKAIEKAKLPENIEKELHEPCKNLCLNGWKGTTRGWIYRMASSPEDLMLQFFSMQRRRRRTSPESDGENSSAGQELLELILTINTNTDGSSDDDGGDNTSNVDDLFD

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.506
	SRR3591706	second leaf	6.930
	SRR3591707	mature leaf	9.117
	SRR3591708	Shoot apex	9.952
	SRR3591709	Stem	15.104
	SRR3591710	White floral bud	25.482
	SRR3591711	White flower	25.409
	SRR3591712	Green floral bud	17.383
	SRR3591713	Yellow flower	25.522
SRP173429	SRR8316895	Juvenile bud stage	15.276
	SRR8316896	Juvenile bud stage	20.771
	SRR8316897	Juvenile bud stage	9.336
	SRR8316894	Third green stage	6.947
	SRR8316900	Third green stage	21.029
	SRR8316901	Third green stage	18.673
	SRR8316898	Complete white stage	16.131
	SRR8316899	Complete white stage	25.530
	SRR8316903	Complete white stage	22.841
	SRR8316902	Silver flowering stage	17.179
	SRR8316904	Silver flowering stage	23.643
	SRR8316905	Silver flowering stage	12.163
	SRR8316906	Gold flowering stage	36.127
	SRR8316907	Gold flowering stage	32.954
	SRR8316908	Gold flowering stage	30.936
SRP132670	SRR6706286	Control	24.156
	SRR6706287	Light intensity 50%	26.044
	SRR6706288	Light intensity 20%	27.051
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.653
	CNS0095593	Slightly white alabastrum(diploid) 2	12.601
	CNS0095594	Slightly white alabastrum(diploid) 3	14.695
	CNS0095595	Whole white alabastrum(diploid) 2	11.482
	CNS0095596	Whole white alabastrum(diploid) 3	13.051
	CNS0095597	Whole white alabastrum(diploid) 4	12.386
	CNS0095598	Silvery flower (diploied) 1	17.085
	CNS0095599	Silvery flower (diploied) 2	18.005
	CNS0095600	Silvery flower (diploied) 3	34.894
	CNS0095601	Golden flower (diploid) 1	19.617
	CNS0095602	Golden flower (diploid) 2	25.269
	CNS0095603	Golden flower (diploid) 3	24.336
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.598
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.836
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.693
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.667
	CNS0095610	Silvery flower (tetraploid) 1	30.370
	CNS0095611	Silvery flower (tetraploid) 2	28.357
	CNS0095612	Silvery flower (tetraploid) 3	39.301
	CNS0095613	Golden flower (tetraploid) 1	16.670
	CNS0095614	Golden flower (tetraploid) 2	21.996
	CNS0095615	Golden flower (tetraploid) 3	26.144
CRA001975	CRR073297	Stem 1	21.294
	CRR073298	Stem 2	20.481
	CRR073299	Stem 3	20.824
	CRR073300	Leaf 1	21.874
	CRR073301	Leaf 2	19.912
	CRR073302	Leaf 3	17.993
	CRR073303	Juvenile bud 1	23.353
	CRR073304	Juvenile bud 2	22.751
	CRR073305	Juvenile bud 3	20.293
	CRR073306	Third green 1	24.098
	CRR073307	Third green 2	22.143
	CRR073308	Third green 3	21.824
	CRR073309	Second white 1	23.901
	CRR073310	Second white 2	23.264
	CRR073311	Second white 3	17.632
	CRR073312	Silver flowering 1	12.980
	CRR073313	Silver flowering 2	15.235
	CRR073314	Silver flowering 3	11.706
	CRR073315	Gold flowering 1	11.867
	CRR073316	Gold flowering 2	14.500
	CRR073317	Gold flowering 3	8.719
	CRR073318	Tawny withering 1	9.579
	CRR073319	Tawny withering 2	8.786
	CRR073320	Tawny withering 3	9.196