Gene detail

Detail information of GWHGAAZE030223

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010646465.1	0	PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Vitis vinifera]
COG	YP_001958461.1	4E-42	hypothetical protein Aasi_1443
Swissprot	tr\|Q2MHE4\|HT1_ARATH	4E-81	Serine/threonine-protein kinase HT1
trEMBL	tr\|D7U4Z3\|D7U4Z3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37812.3}
TAIR10	AT4G38470.1	0	ACT-like protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40154032	40164254	-
GWHAAZE00000009	mRNA	40154032	40164254	-
GWHAAZE00000009	exon	40163739	40164254	-
GWHAAZE00000009	exon	40162953	40163067	-
GWHAAZE00000009	exon	40161882	40161952	-
GWHAAZE00000009	exon	40161603	40161698	-
GWHAAZE00000009	exon	40160927	40160981	-
GWHAAZE00000009	exon	40160592	40160702	-
GWHAAZE00000009	exon	40159905	40159955	-
GWHAAZE00000009	exon	40158036	40158202	-
GWHAAZE00000009	exon	40157779	40157886	-
GWHAAZE00000009	exon	40157337	40157410	-
GWHAAZE00000009	exon	40157006	40157181	-
GWHAAZE00000009	exon	40156726	40156821	-
GWHAAZE00000009	exon	40155763	40155843	-
GWHAAZE00000009	exon	40155616	40155669	-
GWHAAZE00000009	exon	40155349	40155483	-
GWHAAZE00000009	exon	40154032	40154352	-
GWHAAZE00000009	five_prime_UTR	40163933	40164254	-
GWHAAZE00000009	CDS	40163739	40163932	-
GWHAAZE00000009	CDS	40162953	40163067	-
GWHAAZE00000009	CDS	40161882	40161952	-
GWHAAZE00000009	CDS	40161603	40161698	-
GWHAAZE00000009	CDS	40160927	40160981	-
GWHAAZE00000009	CDS	40160592	40160702	-
GWHAAZE00000009	CDS	40159905	40159955	-
GWHAAZE00000009	CDS	40158036	40158202	-
GWHAAZE00000009	CDS	40157779	40157886	-
GWHAAZE00000009	CDS	40157337	40157410	-
GWHAAZE00000009	CDS	40157006	40157181	-
GWHAAZE00000009	CDS	40156726	40156821	-
GWHAAZE00000009	CDS	40155763	40155843	-
GWHAAZE00000009	CDS	40155616	40155669	-
GWHAAZE00000009	CDS	40155349	40155483	-
GWHAAZE00000009	CDS	40154281	40154352	-
GWHAAZE00000009	three_prime_UTR	40154032	40154280	-

Transcript Sequence
>GWHTAAZE030257 GATTCACATGTGGAAGATAATCTTTAAAAATATTATTATGCTTAAATTAATGAAATTAAAACACTGACACACAAAGAGCAATACTGCCGCTGTTCTATTTCCGCTTTATGATTTGTTATTATTATTATTAATTCCTTTGATTAATCCTCTCTCTCTCAAATCAAATCTCCATATCATTTCAAAAAAATACTCTAAAAATCTCCACCTATAAATCTCTTCTTAGTTAACGTAAACACAGTAACACAAATCTAATCTTCTGTATCTAGAGAGAGAAATTTTTTATTTTGATTCTTGCGTAATTGAATTGAATTGAATCAATCAAATGGTGATGGAAGACAACGAGAGTTGTAATAGCAGAGTGGTGGAATCTTCTCCGGCAAATACTAGGCAGCAGAAATTGAAGCTTGAGGTTTACAATGAGGTTCTTCGTAGGCTCAAAGATTCAAATAACGCCGAGGCTAAAGAACCTGGTTTCGATGATGAACTTTGGGCTCACTTCAATCGACTCCCCACTCGGTATGCGTTGGATGTGAATGTCGAAAGGGCAGAAGATGTTCTCACACACAAGCGGTTGTTGCAGCTAGCTCATGATCCTACTCATAGACCTGCATTTGAGGTCCGCCTAGTGCAGGTTTCAGTCTCTGATGGGAAGTCGGGTGATTCGGTTCATTCGAGCCCTCAAAAAGTTGAAGGTAGCCTCAGCGTCCATCCACCTCCTAGCTTTGGTTCATCTCCTAATCTTGAAGCTCTTGCCCTTGATGGGGACAGTTCTGTAAATGCGCATGCAAAGCTTTCCAGGCCCATGCATGAAATTACCTTTTCAACTGATGACAAGCCAAAGCTCCTCAATCAGTTAACTTCTTTACTAGCTGAGGTTGGGCTGAATATCCAAGAAGCACATGCCTTTTCAACTACAGATGGATACTCCTTAGACGTCTTTGTTGTTGATGGTTGGCCATACGAGGAAACTGAACAGCTCCAAATTGCTTTAGGAAAGGAAGTTTTCAAGATTGAGAACCAGTCTTGGCCAAATTCATCTTCTCTAGGTGAGCCTGAGCAGGCAGGAATCAATTGCAACACCGATCGTTTGAAAATTCCTAACGATGGCACTGATGTCTGGGAAATTGATCCTCAACATCTGAAATTTGGGCACAATGTCGCATCTGGTTCATACGGAGATTTATACAAAGGTACGTACTGTAGCCAGGAAGTGGCCATCAAAGTCCTCAAAGCTGAGCGTGTTACTCCAGAGATGCAGAGGGAATTTGCCCAAGAAGTATTCATTATGAGGAAAGTTCGACACAAGAATGTTGTGCAATTCATAGGTGCATGTACCAAACCTCCAAGCTTGTGCATTGTAACAGAATACATGAGTGGTGGGAGTGTGTATGATTATCTGCACAAACAAAGGGGCACATTTAGGCTTCCGTCTTTACTCAAAGTAGCAATCGATATATCAAAGGGAATGAACTACCTGCACCAGAATAATATAATCCACAGGGACTTGAAAGCCGCCAATCTTCTCATGGATGAAAATGAAGTTGTTAAGGTGGCTGATTTTGGTGTCGCCAGAGTGAAAGCTCAGTCTGGAGTTATGACAGCAGAAACTGGGACATATCGATGGATGGCTCCCGAGGTTATAGAACACAAGCCCTATGATCACAAGGCTGATGTTTTCAGTTTCGGGATTGTACTCTGGGAGTTGCTAACTGGAAAGCTTCCATATGAGTACTTAACCCCAGTACAAGCAGCTGTGGGAGTGGTTCAGAAGGGTCTACGGCCTACTATACCGAAGCACACCCATCCGAAACTGACCGAGCTGCTTGAGAGATGCTGGCAACAAGACTCTGCTTCAAGACCTGACTTTTCCGAGATAATAGAGATTCTACAACAAATAGCCAAGGAGGTTGGAGATGATGGAGTTAAGGATAAATCTTCTGGAGGATTCCTTTCTGTTCTGAGACGTGGTCATCACTGAAGCGTACTAGGATGTTTATAGCGTATAAATACTTACCTCTAATGGTGTGCCGTTTCACATTTACATTGTCGTCTGCTCTGTACAGTAGTTTACACTTGTCCGTCAATGTATTTTTTTCTTTCGATTACGTGTTTAGGCATTTAACTCCTTCATTGCTGACTGGAGTAAGTGTAGTGTTGATGAGCACTGTAACTTATAAATATTTTTTAAAGATTCTATAATAACAAATCAAAAGATGAAATTAACCTA

Network for GWHGAAZE030223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01842.26	ACT	163	209	2.30E-06
PF07714.18	PK_Tyr_Ser-Thr	273	522	7.10E-75

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.849
	SRR3591706	second leaf	27.555
	SRR3591707	mature leaf	25.586
	SRR3591708	Shoot apex	11.920
	SRR3591709	Stem	6.713
	SRR3591710	White floral bud	29.844
	SRR3591711	White flower	12.335
	SRR3591712	Green floral bud	33.834
	SRR3591713	Yellow flower	22.033
SRP173429	SRR8316895	Juvenile bud stage	13.001
	SRR8316896	Juvenile bud stage	14.165
	SRR8316897	Juvenile bud stage	7.274
	SRR8316894	Third green stage	6.838
	SRR8316900	Third green stage	20.137
	SRR8316901	Third green stage	23.224
	SRR8316898	Complete white stage	12.402
	SRR8316899	Complete white stage	36.880
	SRR8316903	Complete white stage	21.267
	SRR8316902	Silver flowering stage	3.583
	SRR8316904	Silver flowering stage	5.244
	SRR8316905	Silver flowering stage	3.055
	SRR8316906	Gold flowering stage	6.414
	SRR8316907	Gold flowering stage	5.499
	SRR8316908	Gold flowering stage	5.276
SRP132670	SRR6706286	Control	14.201
	SRR6706287	Light intensity 50%	15.173
	SRR6706288	Light intensity 20%	16.175
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.745
	CNS0095593	Slightly white alabastrum(diploid) 2	13.205
	CNS0095594	Slightly white alabastrum(diploid) 3	9.814
	CNS0095595	Whole white alabastrum(diploid) 2	12.545
	CNS0095596	Whole white alabastrum(diploid) 3	13.270
	CNS0095597	Whole white alabastrum(diploid) 4	11.411
	CNS0095598	Silvery flower (diploied) 1	9.072
	CNS0095599	Silvery flower (diploied) 2	8.129
	CNS0095600	Silvery flower (diploied) 3	10.697
	CNS0095601	Golden flower (diploid) 1	8.718
	CNS0095602	Golden flower (diploid) 2	13.194
	CNS0095603	Golden flower (diploid) 3	13.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.208
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.260
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.077
	CNS0095610	Silvery flower (tetraploid) 1	15.589
	CNS0095611	Silvery flower (tetraploid) 2	14.726
	CNS0095612	Silvery flower (tetraploid) 3	11.396
	CNS0095613	Golden flower (tetraploid) 1	6.891
	CNS0095614	Golden flower (tetraploid) 2	10.487
	CNS0095615	Golden flower (tetraploid) 3	36.497
CRA001975	CRR073297	Stem 1	22.797
	CRR073298	Stem 2	17.235
	CRR073299	Stem 3	14.972
	CRR073300	Leaf 1	33.463
	CRR073301	Leaf 2	25.407
	CRR073302	Leaf 3	22.138
	CRR073303	Juvenile bud 1	26.491
	CRR073304	Juvenile bud 2	26.526
	CRR073305	Juvenile bud 3	22.846
	CRR073306	Third green 1	1.770
	CRR073307	Third green 2	1.845
	CRR073308	Third green 3	2.993
	CRR073309	Second white 1	1.965
	CRR073310	Second white 2	3.266
	CRR073311	Second white 3	2.214
	CRR073312	Silver flowering 1	2.505
	CRR073313	Silver flowering 2	1.604
	CRR073314	Silver flowering 3	1.585
	CRR073315	Gold flowering 1	26.090
	CRR073316	Gold flowering 2	35.006
	CRR073317	Gold flowering 3	18.291
	CRR073318	Tawny withering 1	4.955
	CRR073319	Tawny withering 2	2.741
	CRR073320	Tawny withering 3	5.072