Detail information of GWHGAAZE030227


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282312.12.38721E-19PREDICTED: rop guanine nucleotide exchange factor 1 [Vitis vinifera]
Swissprottr|Q93ZY2|ROGF1_ARATH0.00000001Rop guanine nucleotide exchange factor 1
trEMBLtr|D7U4U0|D7U4U0_VITVI9E-20Putative uncharacterized protein {ECO:0000313|EMBL:CBI37759.3}
TAIR10AT4G38430.10.00002rho guanyl-nucleotide exchange factor 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4024243340242771-
GWHAAZE00000009mRNA4024243340242771-
GWHAAZE00000009exon4024243340242771-
GWHAAZE00000009CDS4024243340242771-
Transcript Sequence

Network for GWHGAAZE030227

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02782srlE Metabolic pathways map01100
Fructose and mannose metabolismmap00051
Phosphotransferase systemmap02060

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.540
SRR3591706second leaf23.775
SRR3591707mature leaf13.699
SRR3591708Shoot apex28.939
SRR3591709Stem29.976
SRR3591710White floral bud21.968
SRR3591711White flower19.061
SRR3591712Green floral bud19.812
SRR3591713Yellow flower7.898
SRP173429 SRR8316895Juvenile bud stage 12.370
SRR8316896Juvenile bud stage 14.243
SRR8316897Juvenile bud stage 6.571
SRR8316894Third green stage 5.948
SRR8316900Third green stage 17.097
SRR8316901Third green stage 18.342
SRR8316898Complete white stage 9.295
SRR8316899Complete white stage 36.100
SRR8316903Complete white stage 16.629
SRR8316902Silver flowering stage5.017
SRR8316904Silver flowering stage6.542
SRR8316905Silver flowering stage3.616
SRR8316906Gold flowering stage 9.975
SRR8316907Gold flowering stage 10.519
SRR8316908Gold flowering stage 9.555
SRP132670SRR6706286Control29.845
SRR6706287Light intensity 50%31.692
SRR6706288Light intensity 20%35.663
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.634
CNS0095593Slightly white alabastrum(diploid) 28.186
CNS0095594Slightly white alabastrum(diploid) 37.448
CNS0095595Whole white alabastrum(diploid) 28.536
CNS0095596Whole white alabastrum(diploid) 36.113
CNS0095597Whole white alabastrum(diploid) 42.984
CNS0095598Silvery flower (diploied) 115.152
CNS0095599Silvery flower (diploied) 213.622
CNS0095600Silvery flower (diploied) 318.287
CNS0095601Golden flower (diploid) 113.875
CNS0095602Golden flower (diploid) 216.977
CNS0095603Golden flower (diploid) 317.910
CNS0095604Slightly white alabastrum(tetraploid) 113.523
CNS0095605Slightly white alabastrum(tetraploid) 211.195
CNS0095606Slightly white alabastrum(tetraploid) 338.349
CNS0095607Whole white alabastrum(tetraploid) 15.532
CNS0095608Whole white alabastrum(tetraploid) 21.885
CNS0095609Whole white alabastrum(tetraploid) 317.445
CNS0095610Silvery flower (tetraploid) 115.307
CNS0095611Silvery flower (tetraploid) 216.302
CNS0095612Silvery flower (tetraploid) 314.337
CNS0095613Golden flower (tetraploid) 14.965
CNS0095614Golden flower (tetraploid) 210.781
CNS0095615Golden flower (tetraploid) 34.422
CRA001975CRR073297Stem 132.564
CRR073298Stem 231.740
CRR073299Stem 342.301
CRR073300Leaf 132.305
CRR073301Leaf 233.462
CRR073302Leaf 340.327
CRR073303Juvenile bud 131.646
CRR073304Juvenile bud 228.861
CRR073305Juvenile bud 339.966
CRR073306Third green 123.371
CRR073307Third green 217.227
CRR073308Third green 320.978
CRR073309Second white 16.206
CRR073310Second white 25.409
CRR073311Second white 310.398
CRR073312Silver flowering 16.312
CRR073313Silver flowering 22.044
CRR073314Silver flowering 34.399
CRR073315Gold flowering 116.842
CRR073316Gold flowering 224.095
CRR073317Gold flowering 325.079
CRR073318Tawny withering 125.902
CRR073319Tawny withering 215.219
CRR073320Tawny withering 333.187