Gene detail

Detail information of GWHGAAZE030239

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278951.1	PREDICTED: probable alanine--tRNA ligase, chloroplastic [Vitis vinifera]
COG	YP_007108626.1	alanyl-tRNA synthetase
Swissprot	tr\|B9HQZ6\|SYAP_POPTR	Probable alanine--tRNA ligase, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03134}
trEMBL	tr\|D7U4W0\|D7U4W0_VITVI	Probable alanine--tRNA ligase, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03134}
TAIR10	AT5G22800.1	Alanyl-tRNA synthetase, class IIc

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40329180	40335565	+
GWHAAZE00000009	mRNA	40329180	40335565	+
GWHAAZE00000009	exon	40329180	40329266	+
GWHAAZE00000009	exon	40330178	40330328	+
GWHAAZE00000009	exon	40330427	40330638	+
GWHAAZE00000009	exon	40330869	40331047	+
GWHAAZE00000009	exon	40331184	40331262	+
GWHAAZE00000009	exon	40331932	40332066	+
GWHAAZE00000009	exon	40332179	40332328	+
GWHAAZE00000009	exon	40332827	40333738	+
GWHAAZE00000009	exon	40333851	40334123	+
GWHAAZE00000009	exon	40334250	40334459	+
GWHAAZE00000009	exon	40334672	40334829	+
GWHAAZE00000009	exon	40335229	40335565	+
GWHAAZE00000009	CDS	40329180	40329266	+
GWHAAZE00000009	CDS	40330178	40330328	+
GWHAAZE00000009	CDS	40330427	40330638	+
GWHAAZE00000009	CDS	40330869	40331047	+
GWHAAZE00000009	CDS	40331184	40331262	+
GWHAAZE00000009	CDS	40331932	40332066	+
GWHAAZE00000009	CDS	40332179	40332328	+
GWHAAZE00000009	CDS	40332827	40333738	+
GWHAAZE00000009	CDS	40333851	40334123	+
GWHAAZE00000009	CDS	40334250	40334459	+
GWHAAZE00000009	CDS	40334672	40334829	+
GWHAAZE00000009	CDS	40335229	40335565	+

Transcript Sequence
>GWHTAAZE030273 ATGGAGGGAAATCTCTCTTCCCATTTACACCCTCAACCTCACTACTCTCTAGAGTTCGACCTAAATCTTCCCTTCCCCTTTCCTCTGGCTTATACATTAGAACTCGATACAGGTTGCAGGGATTATTCAAATTTCACCATACAGACGCTAGCAGTAATTTATCCTGATAGCTGTCCCTCAAGGCATTTTGGAATCAAGGGAGCACGTGAAGTTCAATTCACCTCCAGAAGTACATCAGCATCAATACAACCTTTGACTGAAGAATATGTGGAGGAAGAGAAGTCCAAGGATCTCCCCTCAAGTGGAAATTCCATACGCCAACGGTTTCTTAAATTTTACGAGGCACGGGGTCACAAAATTCTTCCAAGTGCTTCCCTTGTCCCAGATGATCCAACAGTTCTATTGACAATTGCGGGGATGATTCAGTTCAAGCCTATATTCCTTGGAAAGGTTCCCAGAGAAGTACCGTGTGCCACTACTTCCCAAAGGTGTATACGCACAAATGATATTGAGAATGTTGGCCGAACAAGTCGACATCAAACATTCTTTGAGATGCTTGGAAATTTCAGTTTTGGAGATTACTTCAAGAAGGAAGCAATTAAATGGGCTTGGGAGCTTTCAACCGTGGAATTCGGATTACTACCCGACAGAATTTGGATTAGCGTTTATGAAGAAGATGATGAAGCTCTTGCAATTTGGCATGATGAGATAGGTGTTTCAATGCAGCGTATAAAAAGGATGGGTGCAGATGACAATTTTTGGACAAGTGGGGTAACGGGTCCTTGTGGTCCATGCTCTGAGCTTTATTATGATTTCCATCCTGAGAGAGGATTTTCAGATACTGATCTGGGAGATGATACGAGGTTCATAGAGTTCTACAATCTAGTTTTTATGCAGTACAATAGAACGGACGATGGTTCACTTGAACCCTTAAAACAGCAGAATATAGATACTGGGATGGGTTTAGAGCGCATGGCTCGCATCCTTCAGAAGATAATTGGTGATCACTTGCGTGCAATTGTTTATCTCATATCAGATGGGGTTGTCCCATCAAACATTGGGAGAGGGTATATTGTTCGACGGCTCATAAGAAGGGTTGTTCGTATAGGCAGGTTACTTGGTATAGAAGGGGATGGAATGGGAAACCTTGAAGGAGCATTTTTGCCAATACTTGCAACAAAAGTAATTGAATTAAGCCCTCAAATAGATTTAGAAGTAAAATCAAGAGTACCCCGCATTCTTGAGGAGATAAAAAGGGAAGAATTGCGATTCGTATCGACACTGGAGAGAGGAGAAAAGATCCTCGAGCAAAAGTTGGCAGACTCATTGAAAAGCGCTCAGGGAAATGGTACTAAACCTTGTTTGTCTGGTGAGGATGCATTTCTTCTTTACGACACTTTTGGTTTCCCAGTTGAGATAACTACGGAAGTTGCCGGTGAACGCGGTGTTAGTATAGATATGCATGCTTTTGATGTTGAAATGGAGAAGCAAAGACGAAAATCTCAGGCTGCACATAATACCGTTAAACTCTCAGTTGAAAATGATACAGATCTAACAAAAGATGTTGTCGATACTGAATTTCTTGGTTATGATACCCTTTCAGCAAGAGCAGTGGTTGAGGGTCTTGTGGTGAAAGGGAACCCTGTAGTTACTGTTTCTAAAGGAAGTGAAGTTGAAGTTTTACTCAACAGGACCCCGTTTTACGCCGAATCAGGCGGTCAAATTGGAGATCACGGTTTTTTGTATGTTAATGAAGCTGAAAATCAAGCTGTTGTAGCGATAGAAGATGTACAAAAAGCTTTGGGTAACATATATATTCACAAGGGCACTATAAGGGAAGGGATTATAGAGGTGGGAAAGGAAGTCGAAGCTACAGTAGATTCAAACCTGAGGCAGCGAGCACAGGTTCATCACACTGCTACTCATTTGCTACAAGCAGCCCTTAAAAAAGTAATAGGGCAAGAAACATCCCAAGCTGGTTCATTAGTGGCTTTTGACCGACTTAGATTTGATTTCAACTTCCACCGACCACTTCTCGAGGATGAGCTCATGGAAATTGAAAGGCTGATCAATAGATGGATTGGAGATGCTACACTTCTGCACACTAAAGTGATGCCAATAAATGATGCGAAAAAAGCTGGGGCTATTGCTATGTTTGGAGAAAAATATGGGGAGGAGGTGCGTGTGGTAGAGGTTCCGGGGGTATCGATGGAATTATGTGGTGGGACCCATGTTGCAAATACCTCTGAAATACGGGGCTTCAAAATAATATCAGAACAGGGGATTGCATCGGGAATCAGGCGTATTGAAGCTGTTGCTGGCGATGCTTTCATTGAATATGTCAGTTCCAGAGACAACTATATGAAGCAGTTATGCTCCACTCTTAAAGTAAAAGCTGAAGATGTGACAGCAAGGGTGGATTCTCTTTTGGAAGAATTAAGAATGGCAAAGAGTGAAGTTTCAACTGTGCGTGCAAAAGCTGCAGTTTACAAAGCATCAATCATTGCAAACAAAGCATTCAGCGTAGGAACTACGAAAGAAACAAGGGTGCTCGTCGAGTGCATGGATGATATTGATGCTGATTCACTAAAGAGCGCAGCTGAATATCTTCTGGAAACATTGCAAGATCCAGCGGCTGTGATTTTGGGGTCGTGCCCAGGTGAAGGGAAGGTCAGTTTAGTTGCCGCATTCTCTCCCGGGGTTGTAGATATGGGACTTAAAGCTGGGAAGTTTATAGGACCTATAGCCAAATTGTGTGGTGGTGGAGGGGGTGGCAGGCCTAATTTTGCTCAAGCAGGTGGAAGAAAGCCAGAGAATTTGCCGACTGCCCTCGAAAAAGCTAGAACAGAGCTGGTCTTAATCCTATCAGAAAAGGCAAGCTGA

Network for GWHGAAZE030239

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01411.20	tRNA-synt_2c	105	331	6.10E-99
PF07973.15	tRNA_SAD	727	770	4.70E-18
PF02272.20	DHHA1	806	949	1.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01872	AARS, alaS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006419	biological_process	alanyl-tRNA aminoacylation
GO:0043039	biological_process	tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0009507	cellular_component	chloroplast
GO:0000166	molecular_function	nucleotide binding
GO:0004813	molecular_function	alanine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0003676	molecular_function	nucleic acid binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.105
	SRR3591706	second leaf	42.368
	SRR3591707	mature leaf	99.340
	SRR3591708	Shoot apex	25.649
	SRR3591709	Stem	9.629
	SRR3591710	White floral bud	5.986
	SRR3591711	White flower	9.201
	SRR3591712	Green floral bud	5.374
	SRR3591713	Yellow flower	3.908
SRP173429	SRR8316895	Juvenile bud stage	13.103
	SRR8316896	Juvenile bud stage	15.692
	SRR8316897	Juvenile bud stage	5.507
	SRR8316894	Third green stage	4.544
	SRR8316900	Third green stage	12.017
	SRR8316901	Third green stage	9.961
	SRR8316898	Complete white stage	4.331
	SRR8316899	Complete white stage	14.686
	SRR8316903	Complete white stage	9.429
	SRR8316902	Silver flowering stage	4.436
	SRR8316904	Silver flowering stage	6.185
	SRR8316905	Silver flowering stage	2.433
	SRR8316906	Gold flowering stage	9.643
	SRR8316907	Gold flowering stage	6.694
	SRR8316908	Gold flowering stage	7.676
SRP132670	SRR6706286	Control	14.047
	SRR6706287	Light intensity 50%	12.401
	SRR6706288	Light intensity 20%	12.599
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.367
	CNS0095593	Slightly white alabastrum(diploid) 2	6.393
	CNS0095594	Slightly white alabastrum(diploid) 3	7.003
	CNS0095595	Whole white alabastrum(diploid) 2	4.978
	CNS0095596	Whole white alabastrum(diploid) 3	3.617
	CNS0095597	Whole white alabastrum(diploid) 4	5.485
	CNS0095598	Silvery flower (diploied) 1	20.937
	CNS0095599	Silvery flower (diploied) 2	14.948
	CNS0095600	Silvery flower (diploied) 3	18.410
	CNS0095601	Golden flower (diploid) 1	13.751
	CNS0095602	Golden flower (diploid) 2	17.580
	CNS0095603	Golden flower (diploid) 3	17.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.070
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.848
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.528
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.387
	CNS0095610	Silvery flower (tetraploid) 1	21.798
	CNS0095611	Silvery flower (tetraploid) 2	30.996
	CNS0095612	Silvery flower (tetraploid) 3	8.122
	CNS0095613	Golden flower (tetraploid) 1	6.553
	CNS0095614	Golden flower (tetraploid) 2	13.815
	CNS0095615	Golden flower (tetraploid) 3	5.463
CRA001975	CRR073297	Stem 1	22.038
	CRR073298	Stem 2	16.055
	CRR073299	Stem 3	18.659
	CRR073300	Leaf 1	8.473
	CRR073301	Leaf 2	9.010
	CRR073302	Leaf 3	4.779
	CRR073303	Juvenile bud 1	8.167
	CRR073304	Juvenile bud 2	5.315
	CRR073305	Juvenile bud 3	12.502
	CRR073306	Third green 1	2.377
	CRR073307	Third green 2	2.358
	CRR073308	Third green 3	2.549
	CRR073309	Second white 1	3.400
	CRR073310	Second white 2	3.920
	CRR073311	Second white 3	2.833
	CRR073312	Silver flowering 1	1.403
	CRR073313	Silver flowering 2	2.492
	CRR073314	Silver flowering 3	1.784
	CRR073315	Gold flowering 1	73.934
	CRR073316	Gold flowering 2	100.445
	CRR073317	Gold flowering 3	54.165
	CRR073318	Tawny withering 1	7.998
	CRR073319	Tawny withering 2	7.832
	CRR073320	Tawny withering 3	8.151