Gene detail

Detail information of GWHGAAZE030247

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006343857.1	PREDICTED: glycerol-3-phosphate acyltransferase 3-like [Solanum tuberosum]
trEMBL	tr\|M1AWP2\|M1AWP2_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400032021}
TAIR10	AT5G60620.1	glycerol-3-phosphate acyltransferase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40486447	40493786	+
GWHAAZE00000009	mRNA	40486447	40493786	+
GWHAAZE00000009	exon	40486447	40486553	+
GWHAAZE00000009	exon	40486631	40486688	+
GWHAAZE00000009	exon	40487908	40488026	+
GWHAAZE00000009	exon	40489712	40489811	+
GWHAAZE00000009	exon	40490656	40490751	+
GWHAAZE00000009	exon	40491145	40491241	+
GWHAAZE00000009	exon	40491411	40491498	+
GWHAAZE00000009	exon	40491580	40491676	+
GWHAAZE00000009	exon	40491805	40491840	+
GWHAAZE00000009	exon	40491921	40492006	+
GWHAAZE00000009	exon	40492137	40492271	+
GWHAAZE00000009	exon	40492496	40492615	+
GWHAAZE00000009	exon	40492771	40492869	+
GWHAAZE00000009	exon	40493738	40493786	+
GWHAAZE00000009	CDS	40486447	40486553	+
GWHAAZE00000009	CDS	40486631	40486688	+
GWHAAZE00000009	CDS	40487908	40488026	+
GWHAAZE00000009	CDS	40489712	40489811	+
GWHAAZE00000009	CDS	40490656	40490751	+
GWHAAZE00000009	CDS	40491145	40491241	+
GWHAAZE00000009	CDS	40491411	40491498	+
GWHAAZE00000009	CDS	40491580	40491676	+
GWHAAZE00000009	CDS	40491805	40491840	+
GWHAAZE00000009	CDS	40491921	40492006	+
GWHAAZE00000009	CDS	40492137	40492271	+
GWHAAZE00000009	CDS	40492496	40492615	+
GWHAAZE00000009	CDS	40492771	40492869	+
GWHAAZE00000009	CDS	40493738	40493786	+

Transcript Sequence
>GWHTAAZE030281 ATGGTGAAACTAAACACATCGAGGTCTGAATTGGACTTGGATCGACCCAATATCGAAGATTACCTCCCCACTGATTCCATTCAAGAGCCCCTCGGCAAACTTCGCCTGCGTGATTTGCTCGACATTTCGCCCACTTTAACTGAGGCGGCTGGTGCCATTATTGATGATTCTTTCACGCGATGTTTTAAGTCGAATCCTCCGGAACCTTGGAACTGGAATATATATTTATTTCCGCTGTGGTGTTTGGGAGTTATAGTTAGATATGGGATCCTTTTCCCAGTAAGGGTTCTGGTTTTGACATTAGGGTGGATTATATTCCTCTCCTGTTATATTCCTGTGCATTTGCTTTTAAAAGGGCACGATAAGTTGAGGAAAAACTTAGAGAGGTGTCTGGTGGAGTTGATTTGCAGCTTTTTTGTTGCATCATGGACTGGGGTTGTCAGGTACCATGGGCCCCGGCCTAGTATACGGCCTAAGCAGGTTTTTGTTGCCAACCACACATCAATGATTGATTTCATTATTTTAGAGCAGATGACTGCATTTGCTGTTATTATGCAGAAGCATCCTGGATGGGTTGGGCTATTGCAGAGCACCATTCTTGAAAGTGTTGGATGTATCTGGTTCAATCGCTCAGAGGCAAAGGATCGTGAAATTGTAGCAAGAAAGTTAAGGGAACATGTTGAAGGGGCCGATAATAACCCTCTTCTTATCTTCCCGGAAGGAACTTGTGTGAATAACCACTACACTGTTATGTTTAAGAAGTTAAGTACTAATCTGTTAAGTGCTTTAACTGGCTTTGGTGCATTTGAGCTTGGCAGCACTGTTTGTCCAGTTGCAATCAAGTACAACAAAATTTTCGTTGATGCCTTTTGGAATAGCAGGAAGGTGATGCATAGTATCAGCTCATTCTTGGCTATCTTTAGTAGTACAGATAGTTTTGGCATTGCACAAATCCATCTTCCAATAAAAATAAAAAATAAAAATAAAATGAAAAGGCCAAAAGGGGACATGAAAGAGAGACAGTCGTTCACAACACACCTGTTGCAGCTTATGACATCGTGGGCCGTTGTTTGTGATGTGTGGTATCTGGAGCCCCAAAATTTGAAGCCTGGAGAGACACCTATTGAATTTGCAGAGAGGGTTAGGGGAATCATTTCTGTTCGTGCAGGTCTTAAAATGGTTCCTTGGGATGGGTATTTGAAATACTCTCGCCCTAGCCCCAAACATAGAGAGCGCAAGCAACAAAGTTTCGCAGAGTCTGTGCTACGCCGCCTTGAAGAGAAGTAG

Network for GWHGAAZE030247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.22	Acyltransferase	147	280	6.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13506	GPAT3_4, AGPAT9, AGPAT6	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.010
	SRR3591706	second leaf	25.239
	SRR3591707	mature leaf	19.027
	SRR3591708	Shoot apex	29.907
	SRR3591709	Stem	39.355
	SRR3591710	White floral bud	45.922
	SRR3591711	White flower	73.322
	SRR3591712	Green floral bud	31.970
	SRR3591713	Yellow flower	85.529
SRP173429	SRR8316895	Juvenile bud stage	15.874
	SRR8316896	Juvenile bud stage	21.897
	SRR8316897	Juvenile bud stage	10.739
	SRR8316894	Third green stage	8.656
	SRR8316900	Third green stage	25.798
	SRR8316901	Third green stage	24.504
	SRR8316898	Complete white stage	17.191
	SRR8316899	Complete white stage	36.216
	SRR8316903	Complete white stage	25.027
	SRR8316902	Silver flowering stage	30.859
	SRR8316904	Silver flowering stage	35.792
	SRR8316905	Silver flowering stage	19.824
	SRR8316906	Gold flowering stage	77.145
	SRR8316907	Gold flowering stage	80.289
	SRR8316908	Gold flowering stage	78.206
SRP132670	SRR6706286	Control	29.342
	SRR6706287	Light intensity 50%	29.666
	SRR6706288	Light intensity 20%	30.378
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.168
	CNS0095593	Slightly white alabastrum(diploid) 2	26.751
	CNS0095594	Slightly white alabastrum(diploid) 3	25.659
	CNS0095595	Whole white alabastrum(diploid) 2	28.210
	CNS0095596	Whole white alabastrum(diploid) 3	29.364
	CNS0095597	Whole white alabastrum(diploid) 4	29.665
	CNS0095598	Silvery flower (diploied) 1	34.919
	CNS0095599	Silvery flower (diploied) 2	33.122
	CNS0095600	Silvery flower (diploied) 3	55.805
	CNS0095601	Golden flower (diploid) 1	33.436
	CNS0095602	Golden flower (diploid) 2	54.032
	CNS0095603	Golden flower (diploid) 3	50.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.217
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.257
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.847
	CNS0095610	Silvery flower (tetraploid) 1	58.663
	CNS0095611	Silvery flower (tetraploid) 2	50.569
	CNS0095612	Silvery flower (tetraploid) 3	35.194
	CNS0095613	Golden flower (tetraploid) 1	58.131
	CNS0095614	Golden flower (tetraploid) 2	55.595
	CNS0095615	Golden flower (tetraploid) 3	54.207
CRA001975	CRR073297	Stem 1	19.004
	CRR073298	Stem 2	23.532
	CRR073299	Stem 3	20.571
	CRR073300	Leaf 1	24.572
	CRR073301	Leaf 2	24.610
	CRR073302	Leaf 3	20.557
	CRR073303	Juvenile bud 1	25.749
	CRR073304	Juvenile bud 2	19.847
	CRR073305	Juvenile bud 3	23.788
	CRR073306	Third green 1	13.161
	CRR073307	Third green 2	17.949
	CRR073308	Third green 3	15.639
	CRR073309	Second white 1	21.408
	CRR073310	Second white 2	24.553
	CRR073311	Second white 3	26.035
	CRR073312	Silver flowering 1	36.707
	CRR073313	Silver flowering 2	34.088
	CRR073314	Silver flowering 3	40.142
	CRR073315	Gold flowering 1	14.784
	CRR073316	Gold flowering 2	21.575
	CRR073317	Gold flowering 3	14.870
	CRR073318	Tawny withering 1	25.361
	CRR073319	Tawny withering 2	20.115
	CRR073320	Tawny withering 3	25.717