Gene detail

Detail information of GWHGAAZE030251

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279546.1	0	PREDICTED: U-box domain-containing protein 15 [Vitis vinifera]
COG	YP_001957542.1	6E-15	hypothetical protein Aasi_0393
Swissprot	tr\|Q681N2\|PUB15_ARATH	0	U-box domain-containing protein 15
trEMBL	tr\|F6I0T1\|F6I0T1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60547.1}
TAIR10	AT5G42340.1	0	Plant U-Box 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40534182	40537289	-
GWHAAZE00000009	mRNA	40534182	40537289	-
GWHAAZE00000009	exon	40534182	40535237	-
GWHAAZE00000009	exon	40535476	40535898	-
GWHAAZE00000009	exon	40536642	40536758	-
GWHAAZE00000009	exon	40536876	40537289	-
GWHAAZE00000009	CDS	40536876	40537289	-
GWHAAZE00000009	CDS	40536642	40536758	-
GWHAAZE00000009	CDS	40535476	40535898	-
GWHAAZE00000009	CDS	40534182	40535237	-

Transcript Sequence
>GWHTAAZE030285 ATGGAGGGAGAGGCAGAGAAGGGGAATACGTCGATTTCAATGGAGCGTGAAAGGAGTGAGAGTGTTTTAGTGAGAGAAATGATGGAAGTGATTGAGACTGTGGGGGCCTTCAACAGTTTTAGAAGGACACAAAGGAAAGAATGCTTGAGCCTTGTGAGGAGGTTAAGGCTTTTAATTCCTCTTTTGGAAGAGATTAGGGAGTTTGATTCCTCGGTTCCGGCTAGAGCATTGAATCATTTGGCTGGTTTGAAGAAGGCACTTGCTTCTGCTAAGAAATTGTTGAAGAGTTGCAACTATGGAAGCAAGATTTATCTGGTTCCTTCTCTCTCTTCTATCTCTCTCTCTCTCTCTATATATATATATATATATATATGTAAATATAAAGGATCTAGTTCCTGCGAAATTATTTTAGTGGCATTTGAGAGCGAAGCAGTTGTGAGTAGATTTCATGCCGTTTATGACAAATTAAACGAAGCATTGGATCATATGCCGTATGAGGAGCTTGGGATTTCAGAAGAAGTGAAAGAACAAGTTGAGCTAATGTCTGAGCAACTCAAAAGAGCAAAGAGAAGAACAGATACTCTGGATATAGAACTAGCAATGGATATGATGATTGTGTTTTCTAAAACAGATGACAGAAATGCTGACATTGCAATAATAGAAAGACTAGCAAAAAAATTAGATCTATACACTGTTCAAGACTTGGAAGCAGAAACAATAGCAGTTAGAAAACTTGTTAAGAACAGAAGCTCGCATAATGCAGAGAGCACCCAGCAGATTGCAGATCTCTTGGGAAAATTCAAACAAATTGCTGGGCTTGAGGAAAATAGCGTTCTTGATGATCCTTCAGCAAGAAGATTAGAAAAGTGCCGGTCTTTACTAGTCCCTCATGAATTCCTCTGTCCGATATCACTGGAAATAATGACCGATCCTGTTATTGTCGCAACTGGGCAGACGTATGAAAGGGAGAGCATACAGAAGTGGTTGGATTCGAATCATCGAACTTGCCCAAAGACCGGTCAAACTTTAAGTCACTTATTACTAGCACCAAACTACGCCCTTCGAAATCTTATACTGCAATGGTGTGAAAAGAATAATTTTGAATTACCCAAGAAGGACTCTAATGTTGGCTCGGAAAGTTCTTGTACTGCACTCATAGAGGAAATTTATTCGTCGGTACAAAATTTATCCTCTTGTCAAGTGGATATACAAAGGGAAGCTGTTGTGACAATTCGTATGCTATCAAAGGAAAACCCAGACAACAGAACTTTGATTGCCAATGCTGGAGGAATCCCACCATTGATTCAGCTTTTATCTTATCCAAATTCCAGTGTACAAGAGCACGCAGTGACTGCTCTGTTGAACTTATCTCTTGATGAAGCAAACAAACGGCTCATAGCCCGAGAAGGAGCAATTCCCAAGATTATTGAAGTATTGCATAATGGAACCGATGAAGCTCGAGAGAACTCTGCAGCAGCCTTATTTAGTCTATCAATGCTACACGAGAACAAAGTAATGGTGGGTTGTTTAAATGGGATTCCTCCATTAGTAGACCTCTTGCAGAATGGGACAACTAGAGGTAAAAAAGATGCTGCAACTGCACTCTTTAACTTATCGCTCAACCAAGCAAACAAATCAAGGGCCATTAAGGCGGGTATAATACCGGCACTGCTTCATTTGCTCAAAGACAAGAACTTGGGTATGATTGATGAAGCCCTCTCGATTTTGCTACTTCTTGCATCGCAGACCGAAGGGCACAGTGCGATTGGTCATATATCAGTCATTGAGGCTTTGGTTGGGATCACAAGGGACGGGACCCCCAAGAACAAGGAGTGTGCTACAGCGGTTCTTCTCGAGTTAGGATCAAAGAATTCATCTTTCATATTGGCTGCACTTCAGTATGGTGTTTATGATCATCTTATAGAAATAACAAACTGTGGGACAAACAGAGCGCAAAGGAAAGCCAAGTCCCTCTTGCAACACATGAGTAAGTGTGAGCACATCCCTTGA

Network for GWHGAAZE030251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.16	U-box	295	365	1.20E-21
PF00514.24	Arm	418	457	8.40E-11
PF00514.24	Arm	502	539	9.10E-06
PF00514.24	Arm	541	577	0.0001

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0005515	molecular_function	protein binding
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	88.802
	SRR3591706	second leaf	22.231
	SRR3591707	mature leaf	13.923
	SRR3591708	Shoot apex	15.471
	SRR3591709	Stem	39.913
	SRR3591710	White floral bud	43.247
	SRR3591711	White flower	8.026
	SRR3591712	Green floral bud	16.627
	SRR3591713	Yellow flower	0.474
SRP173429	SRR8316895	Juvenile bud stage	4.926
	SRR8316896	Juvenile bud stage	7.322
	SRR8316897	Juvenile bud stage	3.919
	SRR8316894	Third green stage	5.306
	SRR8316900	Third green stage	18.371
	SRR8316901	Third green stage	16.666
	SRR8316898	Complete white stage	34.958
	SRR8316899	Complete white stage	58.003
	SRR8316903	Complete white stage	59.131
	SRR8316902	Silver flowering stage	12.834
	SRR8316904	Silver flowering stage	17.866
	SRR8316905	Silver flowering stage	9.104
	SRR8316906	Gold flowering stage	37.293
	SRR8316907	Gold flowering stage	13.547
	SRR8316908	Gold flowering stage	9.712
SRP132670	SRR6706286	Control	5.309
	SRR6706287	Light intensity 50%	8.987
	SRR6706288	Light intensity 20%	7.570
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.053
	CNS0095593	Slightly white alabastrum(diploid) 2	26.691
	CNS0095594	Slightly white alabastrum(diploid) 3	9.063
	CNS0095595	Whole white alabastrum(diploid) 2	15.920
	CNS0095596	Whole white alabastrum(diploid) 3	5.623
	CNS0095597	Whole white alabastrum(diploid) 4	13.178
	CNS0095598	Silvery flower (diploied) 1	15.135
	CNS0095599	Silvery flower (diploied) 2	12.706
	CNS0095600	Silvery flower (diploied) 3	27.589
	CNS0095601	Golden flower (diploid) 1	13.794
	CNS0095602	Golden flower (diploid) 2	17.793
	CNS0095603	Golden flower (diploid) 3	17.745
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.308
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.599
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.497
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.523
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.798
	CNS0095610	Silvery flower (tetraploid) 1	4.178
	CNS0095611	Silvery flower (tetraploid) 2	4.290
	CNS0095612	Silvery flower (tetraploid) 3	7.444
	CNS0095613	Golden flower (tetraploid) 1	0.512
	CNS0095614	Golden flower (tetraploid) 2	2.431
	CNS0095615	Golden flower (tetraploid) 3	1.987
CRA001975	CRR073297	Stem 1	8.847
	CRR073298	Stem 2	8.174
	CRR073299	Stem 3	6.232
	CRR073300	Leaf 1	23.904
	CRR073301	Leaf 2	22.946
	CRR073302	Leaf 3	15.927
	CRR073303	Juvenile bud 1	15.639
	CRR073304	Juvenile bud 2	12.354
	CRR073305	Juvenile bud 3	23.847
	CRR073306	Third green 1	15.087
	CRR073307	Third green 2	13.148
	CRR073308	Third green 3	16.956
	CRR073309	Second white 1	1.827
	CRR073310	Second white 2	2.424
	CRR073311	Second white 3	1.752
	CRR073312	Silver flowering 1	5.072
	CRR073313	Silver flowering 2	2.041
	CRR073314	Silver flowering 3	4.352
	CRR073315	Gold flowering 1	11.509
	CRR073316	Gold flowering 2	17.333
	CRR073317	Gold flowering 3	8.386
	CRR073318	Tawny withering 1	43.977
	CRR073319	Tawny withering 2	37.337
	CRR073320	Tawny withering 3	51.978