Gene detail

Detail information of GWHGAAZE030256

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645909.1	9.9743E-106	PREDICTED: zinc finger protein ZAT3 [Vitis vinifera]
Swissprot	tr\|O65499\|ZAT3_ARATH	1E-73	Zinc finger protein ZAT3
trEMBL	tr\|A0A061DZD1\|A0A061DZD1_THECC	1E-104	C2H2-like zinc finger protein, putative {ECO:0000313\|EMBL:EOX97446.1}
TAIR10	AT4G35280.1	4E-57	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40625133	40626050	+
GWHAAZE00000009	mRNA	40625133	40626050	+
GWHAAZE00000009	exon	40625133	40625531	+
GWHAAZE00000009	exon	40625568	40626050	+
GWHAAZE00000009	CDS	40625133	40625531	+
GWHAAZE00000009	CDS	40625568	40626050	+

Transcript Sequence
>GWHTAAZE030290 ATGAACCACACTACCACTTCTAATTTTCAACTCTGCCCTTCGCCGGACGGCCACCAAATCTTCCGGTCCTTTGATATATACCCCAAACCCAGAAAGAAGCGCACCAAATTGATCAAAATCGACAATCCCGCCGGCACAAGTTGTTCCACCGGCGGCACTAAGCCCAAGTCCGGCAAGAAACCTGAATTGGGTGCTCCAAAGATAACCCGACCCTGCAGCGAGTGCGGCAAGACATTCTGGTCATGGAAGGCCCTTTTCGGGCACATGAGGTGCCACCCGGAGCGGCAGTGGAGGGGAATCAACCCTCCGGCGAATCTCCGGCGACGGGAAAACATTAATGTGGAGAACGAATTAGTGACGGAGGAGGATCACATGGTTGCCACGTGTCTCTTAATGCTGGGTTTTGGTAATCAAGAGGAGGAGGTTTTTGATTGTGAGAGTAATTCAAGATTTGAGTGTTCAAGTTGCAAGAAAGTGTTTGGGTCACACCAGGCCTTGGGCGGTCACAGGGCAAGTCACAAGAATGTGAAGGGCTGCTTTGCGATTAAAAGAAATGATGGGGAGGAAGGGGAGGGGGTTAGCGTAAGTAGTGAAAATGTTGGGGAAAGAAATAGGGAAGAGGAGCTTGATGAGAAAATGGTGATGGTTTTAGGGCACACGTGTAGTATTTGTTTAAGGGTTTTTTCAAGTGGTCAAGCACTTGGTGGGCACAAGAGGTGCCATTGGGAGAAAGGGGATGAGACATCTTCATTGATCACACAAGATGGGCTCGGGCCGTTTGGGACAGAAGAGGTTTGTGGTTTGGACTTGAATTTGCCTGCAACTATAGAAGGTGATTCTTGCAATTCAGGTTTGGCTTTGGATTTAAGTTTGGGTTTGTGA

Network for GWHGAAZE030256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	71	94	5.50E-08
PF13912.7	zf-C2H2_6	150	174	7.20E-10
PF13912.7	zf-C2H2_6	219	243	1.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.483
	SRR3591706	second leaf	0.499
	SRR3591707	mature leaf	0.659
	SRR3591708	Shoot apex	0.471
	SRR3591709	Stem	1.158
	SRR3591710	White floral bud	3.417
	SRR3591711	White flower	2.120
	SRR3591712	Green floral bud	3.635
	SRR3591713	Yellow flower	2.643
SRP173429	SRR8316895	Juvenile bud stage	1.219
	SRR8316896	Juvenile bud stage	1.812
	SRR8316897	Juvenile bud stage	0.791
	SRR8316894	Third green stage	0.281
	SRR8316900	Third green stage	1.859
	SRR8316901	Third green stage	2.309
	SRR8316898	Complete white stage	0.097
	SRR8316899	Complete white stage	0.214
	SRR8316903	Complete white stage	0.312
	SRR8316902	Silver flowering stage	0.443
	SRR8316904	Silver flowering stage	0.379
	SRR8316905	Silver flowering stage	0.271
	SRR8316906	Gold flowering stage	0.588
	SRR8316907	Gold flowering stage	0.755
	SRR8316908	Gold flowering stage	0.714
SRP132670	SRR6706286	Control	1.019
	SRR6706287	Light intensity 50%	1.527
	SRR6706288	Light intensity 20%	1.230
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.048
	CNS0095593	Slightly white alabastrum(diploid) 2	1.145
	CNS0095594	Slightly white alabastrum(diploid) 3	1.265
	CNS0095595	Whole white alabastrum(diploid) 2	2.846
	CNS0095596	Whole white alabastrum(diploid) 3	3.409
	CNS0095597	Whole white alabastrum(diploid) 4	3.280
	CNS0095598	Silvery flower (diploied) 1	0.227
	CNS0095599	Silvery flower (diploied) 2	0.888
	CNS0095600	Silvery flower (diploied) 3	0.275
	CNS0095601	Golden flower (diploid) 1	0.229
	CNS0095602	Golden flower (diploid) 2	0.308
	CNS0095603	Golden flower (diploid) 3	0.034
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.021
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.179
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.648
	CNS0095610	Silvery flower (tetraploid) 1	0.144
	CNS0095611	Silvery flower (tetraploid) 2	0.058
	CNS0095612	Silvery flower (tetraploid) 3	0.431
	CNS0095613	Golden flower (tetraploid) 1	0.085
	CNS0095614	Golden flower (tetraploid) 2	0.684
	CNS0095615	Golden flower (tetraploid) 3	0.269
CRA001975	CRR073297	Stem 1	0.762
	CRR073298	Stem 2	0.309
	CRR073299	Stem 3	0.209
	CRR073300	Leaf 1	1.926
	CRR073301	Leaf 2	0.791
	CRR073302	Leaf 3	0.187
	CRR073303	Juvenile bud 1	0.267
	CRR073304	Juvenile bud 2	0.536
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.296
	CRR073307	Third green 2	0.317
	CRR073308	Third green 3	0.123
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.110
	CRR073311	Second white 3	0.197
	CRR073312	Silver flowering 1	0.596
	CRR073313	Silver flowering 2	0.098
	CRR073314	Silver flowering 3	0.253
	CRR073315	Gold flowering 1	0.363
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.564
	CRR073319	Tawny withering 2	0.225
	CRR073320	Tawny withering 3	0.000