Gene detail

Detail information of GWHGAAZE030257

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010645880.1	PREDICTED: protein NLP2-like [Vitis vinifera]
Swissprot	tr\|Q7X9B9\|NLP2_ARATH	Protein NLP2
trEMBL	tr\|F6I0S7\|F6I0S7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60543.1}
TAIR10	AT4G35270.1	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40645562	40649283	+
GWHAAZE00000009	mRNA	40645562	40649283	+
GWHAAZE00000009	exon	40645562	40646446	+
GWHAAZE00000009	exon	40646762	40646809	+
GWHAAZE00000009	exon	40646905	40647808	+
GWHAAZE00000009	exon	40648415	40649283	+
GWHAAZE00000009	CDS	40645562	40646446	+
GWHAAZE00000009	CDS	40646762	40646809	+
GWHAAZE00000009	CDS	40646905	40647808	+
GWHAAZE00000009	CDS	40648415	40649283	+

Transcript Sequence
>GWHTAAZE030291 ATGCTTGGAACACTTGCTGGCAACAGTATGGATGTCGATCTTATGGATGAGCTCTTGTATGATGGATGTTGGTTAGAGACTACTGACGGGTCCAATATTTGGCAGCCCGATATTACATCTTCAAGCCCTTCAAATTTCTCGTCACCTCTACTTTCATTTTCAGCCTTGGAGAATTCGAATCCAATTCCCCAAGAAAAAAGTTTCGAAGAAGAAACAGAAAGATCAAACTCCATTGACAACCCACCTCTCATATCTCCCCAACCGGAAGAACTGTTTGGAGTTCAAACACAAAACTGGGAAACCATATCAACTTCAGCTTCAGCATCTTCTACCAAATCCCAAAACTTTTTGATCGAAAACCATGACATGAGTAAAAGATTGTGGATTGGACCGAGTAGAATTCCAACTCCAAATACCTCAATGAAAAAGAGATTAGTGCAAGCGTTTGAATACCTAAAAGAATCCACTAGAGATAGAGATGTACTTATTCAGATATGGGTGCCTATAAAGAAAGGAGACAAACGTGTACTTAGCACTAAGAATCAACCATTTTCCTTCAATCCAAAGTTTGAGAGCCTTGCTGGTTACAGAGATGTTTCGAGGAACTATAATTTTCCGGTGGAGGCAGATTCAAAGGAGTTAGCTGGGTTGCCTGGGCGGGTTTTCATGAAGAAGTTGCCCGAGTGGACCCCTGATGTTCGTTTTTTTAAAAGCGACGAGTACCCACGTGTTAATTATGCTCAACAGTACAACGTTAGCGGGTCCCTTGCACTTCCCGTTTTTGAACGAGGGAGTGGGACTTGCTTGGGTGTGATTGAGATCGTCACCACCACTCAGACTGTCAATTATCGTCCTGAACTTGAGAATGTCTGCAAAGCTCTTGAGGCTGTTGATCTAAGAAGTTCTGAAATATCAAGTCCTCCCCAAATAAAGGATCCTGACGAGTCTTACCGAGCCTTATTAGCAGAGCTTCAAGAAGTTCTAAAATCTGTCTGTGACGCTCATGAATTACCACTGGCTCAGACGTGGGCCCCGTGTAATCAACAAGGTAAAGGCGGGTGCCGGCACACTGACCAAAACTACACCTCTTGCATCTCAATAGTTGATTCCGCTTCCTATGTTCCCAACAAACAAGTTTCGAGCTTTCACGAGGCATGTGCCGAGCACCACCTCCTTAGAGGCGAAGGTGTGGCAGGGGGAGCATTCTTGACCAATCAGCTTTGCTTTGCTCCCAACATTAGGGATTTCAGCAAGACAGAATACCCTCTCTCTCATCATGCAAGGATGTTTGATCTGCGTGCCGCTGTGGCAATGCGCCTTCGTAGCATCTACACCGGCTCCAATGATTTCATTTTGGAGTTCTTTCTGCCCTGGGATTGTGAAGATGGTGAAGAACAAAATCGGGTGATCGGTTCGTTGTTGTCTGTGATACAACAGGTTTCCAGGAGTTTACGTGTCGTTGCCGACGAGGAGGTAACTGAAGAAACGGCAATTCCCGAAAAAGAAAGGGATGAGAATGAATCACCTTGGATTGCAAGTACGATGGACACTCAAAGTAAGGGTAAAGGTGTTTTTGGTTCATTTGGGTATGATGAGGAAGTGGCAGAAGAAGAAGAGGAGGAGGAATATAAGGTGGCGACAACCCATTCGAATAATGGTGAGAAGGGGTTGCATGGGAAGCCGGTTTTAGAGCTTAAGAAAAATCAGCGGGAATCTGAATCTAAAGGAAGAAAAGTAGGTGAAAAGAGAAGGAAGAAGACAGAGAGAACAATCAGTTTGCAAGTACTTCGGCAGTACTTCTCCGGGAGCCTTAAAGAAGCTGCTAAGAGTATTGGGGTGTGCCCTACTACTTTGAAAAGGATATGCAGGCAACACGGAATCTCCAGATGGCCTTCTCGGAAAATCAAGAAAGTAGGCCACTCATTAAAGAAACTCCAACTCGTTATCGACTCGGTCCAAGGTGCCGAGGGTGCTATTCAACTGAGTTCCTTCTACACCAACTTCCCAGAACTAAGCTCTTCAATTTCACCCGCGACAAATGATGACTCGAAGCATAAAATAAACACGCAACCCGAGGTCAACGTCTTCTGCCCGGGACCCACAGCTTCAAAATCCCTTTCTTCTTCTACCAGCCATAGTTCTGGCTCAAGTTTCTGGTTTTCCACTGGAGCAAAGCACCCATCTGTCACCACTAGTGCCTCTGGTAGTCAAGAGGCTGACCAGCCTGAGGGAATGCTAAAACGAGCCAAGAGTGACGCAGAATTGCACGACCTGGACCGGGATGAAGCAAAGTTTCTGGTAAGATCCCATAGCGATAAAATCTTGATTGAGCAACCACTTGAGGTTATACCTCCGTTACTGAAAAGCAGCAGCCGGGTTTTCCGGGAAAAGGGTGGTTATCGAGTAAAAGCTACACTTGGAGAAGAGAAAATCCGGTTCAGCATGCCACACCACTGGGGTTTAGGGGACTTGAGGCGAGAGATTGTGCAGCGTTTTAGTATAGAGGATATTAGTAAGATGGATCTGAAGTATTTGGATGATGACTTTGAGTGGGTTCTGTTAACATGTGATGCTGATCTTGAGGAGTGCATAGATGTGCACAGATTGTGTAGCACCCGCACAATCAAAATCACTTTGCACCATGCGGTTCGTCCGAATCTTGGGAGTTCTTTTGAAAGCAGAAATGGCCAATCCCTAGTGCCATGA

Network for GWHGAAZE030257

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	590	638	2.30E-25
PF00564.25	PB1	800	881	3.40E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.496
	SRR3591706	second leaf	7.947
	SRR3591707	mature leaf	21.852
	SRR3591708	Shoot apex	6.263
	SRR3591709	Stem	12.199
	SRR3591710	White floral bud	12.329
	SRR3591711	White flower	35.291
	SRR3591712	Green floral bud	7.910
	SRR3591713	Yellow flower	30.156
SRP173429	SRR8316895	Juvenile bud stage	7.881
	SRR8316896	Juvenile bud stage	8.289
	SRR8316897	Juvenile bud stage	3.457
	SRR8316894	Third green stage	4.337
	SRR8316900	Third green stage	11.645
	SRR8316901	Third green stage	11.919
	SRR8316898	Complete white stage	5.776
	SRR8316899	Complete white stage	19.414
	SRR8316903	Complete white stage	11.383
	SRR8316902	Silver flowering stage	8.833
	SRR8316904	Silver flowering stage	13.001
	SRR8316905	Silver flowering stage	7.577
	SRR8316906	Gold flowering stage	25.589
	SRR8316907	Gold flowering stage	27.025
	SRR8316908	Gold flowering stage	33.908
SRP132670	SRR6706286	Control	13.234
	SRR6706287	Light intensity 50%	13.615
	SRR6706288	Light intensity 20%	14.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.898
	CNS0095593	Slightly white alabastrum(diploid) 2	4.843
	CNS0095594	Slightly white alabastrum(diploid) 3	4.888
	CNS0095595	Whole white alabastrum(diploid) 2	4.575
	CNS0095596	Whole white alabastrum(diploid) 3	3.914
	CNS0095597	Whole white alabastrum(diploid) 4	4.372
	CNS0095598	Silvery flower (diploied) 1	13.443
	CNS0095599	Silvery flower (diploied) 2	11.341
	CNS0095600	Silvery flower (diploied) 3	30.084
	CNS0095601	Golden flower (diploid) 1	11.545
	CNS0095602	Golden flower (diploid) 2	27.512
	CNS0095603	Golden flower (diploid) 3	27.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.279
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.025
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.685
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.600
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.591
	CNS0095610	Silvery flower (tetraploid) 1	37.565
	CNS0095611	Silvery flower (tetraploid) 2	34.272
	CNS0095612	Silvery flower (tetraploid) 3	24.036
	CNS0095613	Golden flower (tetraploid) 1	16.409
	CNS0095614	Golden flower (tetraploid) 2	28.560
	CNS0095615	Golden flower (tetraploid) 3	21.718
CRA001975	CRR073297	Stem 1	8.702
	CRR073298	Stem 2	8.929
	CRR073299	Stem 3	8.071
	CRR073300	Leaf 1	10.462
	CRR073301	Leaf 2	9.358
	CRR073302	Leaf 3	5.501
	CRR073303	Juvenile bud 1	7.491
	CRR073304	Juvenile bud 2	6.142
	CRR073305	Juvenile bud 3	15.748
	CRR073306	Third green 1	6.253
	CRR073307	Third green 2	7.108
	CRR073308	Third green 3	8.894
	CRR073309	Second white 1	4.777
	CRR073310	Second white 2	8.033
	CRR073311	Second white 3	9.392
	CRR073312	Silver flowering 1	8.282
	CRR073313	Silver flowering 2	7.368
	CRR073314	Silver flowering 3	7.855
	CRR073315	Gold flowering 1	7.003
	CRR073316	Gold flowering 2	13.658
	CRR073317	Gold flowering 3	8.266
	CRR073318	Tawny withering 1	10.232
	CRR073319	Tawny withering 2	7.809
	CRR073320	Tawny withering 3	6.726