Gene detail

Detail information of GWHGAAZE030260

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593137.1	0	PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Nicotiana tomentosiformis]
COG	YP_001276011.1	2E-26	protein kinase
Swissprot	tr\|P27450\|CX32_ARATH	1E-149	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|M1B6A1\|M1B6A1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400038068}
TAIR10	AT2G17220.2	1E-146	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40718986	40722987	-
GWHAAZE00000009	mRNA	40718986	40722987	-
GWHAAZE00000009	exon	40722644	40722987	-
GWHAAZE00000009	exon	40721746	40722071	-
GWHAAZE00000009	exon	40720556	40720691	-
GWHAAZE00000009	exon	40720288	40720430	-
GWHAAZE00000009	exon	40719802	40719925	-
GWHAAZE00000009	exon	40718986	40719407	-
GWHAAZE00000009	five_prime_UTR	40722711	40722987	-
GWHAAZE00000009	CDS	40722644	40722710	-
GWHAAZE00000009	CDS	40721746	40722071	-
GWHAAZE00000009	CDS	40720556	40720691	-
GWHAAZE00000009	CDS	40720288	40720430	-
GWHAAZE00000009	CDS	40719802	40719925	-
GWHAAZE00000009	CDS	40718986	40719407	-

Transcript Sequence
>GWHTAAZE030294 ATAAATTCCAAATTCGTGATGCATACGCATCTTTGACTAGACTTACAACTGTTGATCTCTTTATAAGAACCGAAAATTTATCCTCATTTCCTACTTTTGAGAACAGGACGATCCTAGTCAAGTCAAGCAAATTAATTATTGAGGGCAGTTGTTGATTTAAGAAGATTTTGATCAAGCAGGTGGTTTTGAAGGCCTTGTGTTTCTGTACTCTGTTTTTTTCAGCTAGGGGGAAAATTACTATGATCATTTGTTTGTCTTAATAAATTTCTTGAGAGAGATGGGGATTTGCTGGAGCTCTCCTCCTGTTAGCCAAAGTCCTAACTCCACTGGCAATATTACTTCAGTATCACAAACAACCAGCAACACAACATCTTCAGGCAGCAGCAGCACAGTCTCGGGTAACAGCTTATTCTCGTCAGCAGGTGGAACCGATGAGGTGCCTCCCACTGGGCAGATATTGCCCACACCCAATTTGAGGATATTCAGTTTCTCAGAACTGAAGATTGCCACCCGAAATTTTAGAGGTGATACAGTTTTGGGAGAAGGAGGTTTTGGGAAAGTTTACAAGGGTTGGCTTGATGAGAAAGTGAACCCAAAGAATGGAACTGGATCTGTAGTTGCTGTCAAGAAGTTAAATGATGAGAGCATGCAAGGATTGCAAGAATGGCAGTCGGAGGTGAACTTCCTAGGAAGGCTTTCGCACCCAAACCTTGTTAGGCTGTTGGGATACTGTTGGGAGGATAAAGACCTACTCCTTGTATACGAATTCATGCAAAAGGGCAGCTTGGAAAATCACCTTTTTGGAAGAGGCTCAGCTGTTCAGCCACTTCCATGGGAACTGCGAATAAAGGTCTTAATCGGAGCGGCTCGAGGCCTTGCATTCTTGCATACATCAGAGAAACAAGTCATTTATAGAGACTTCAAGGCATCAAATATATTGCTCGATGGGTCCTACAATGCCAAGATATCAGACTTCGGCTTGGCAAAAATGGGACCATCAGCCAGTCAATCACATGTTACAACGCGTGTTATGGGAACATATGGCTACGCTGCTCCCGAGTATGTTGCCACAGGGCATCTGTACGTAAAGAGCGATGTGTATGGTTTTGGTGTTGTATTGGTCGAAATGCTGACCGGGTTACGAGCCCTAGATATAAATCGCCCGAGCAGACAACATAACCTGATTGATTGGGTCAAACCAATTTTAAATGACAGAAGAAAGTTGAAGAACATAATGGACTCAAGGTTGGAGGGAAAATATCCTTCAAAAGGTGCAGTACAAATTGCCCAGCTTGCTCTAACATGCCTTGGACCTGAACCCAAAACCAGGCCGTCAATGAAAGATGTTGTAGAGACACTTGAGCGAGTTGGAGCTTCTAAAGAAAGGCCAAAAAGAACTAGAGCAAGTTCTACTCGGCGTACTACTCATCATCAATATGGTCAACAACCTTTGCCCTATCGATCTCCACTTCACCCTCGCCAAGATGGAAACTGA

Network for GWHGAAZE030260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0157

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	85	361	2.60E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.904
	SRR3591706	second leaf	1.142
	SRR3591707	mature leaf	5.011
	SRR3591708	Shoot apex	1.707
	SRR3591709	Stem	27.495
	SRR3591710	White floral bud	9.505
	SRR3591711	White flower	31.219
	SRR3591712	Green floral bud	2.411
	SRR3591713	Yellow flower	37.918
SRP173429	SRR8316895	Juvenile bud stage	5.329
	SRR8316896	Juvenile bud stage	8.330
	SRR8316897	Juvenile bud stage	6.061
	SRR8316894	Third green stage	1.929
	SRR8316900	Third green stage	1.689
	SRR8316901	Third green stage	3.508
	SRR8316898	Complete white stage	4.170
	SRR8316899	Complete white stage	18.385
	SRR8316903	Complete white stage	6.186
	SRR8316902	Silver flowering stage	9.014
	SRR8316904	Silver flowering stage	10.229
	SRR8316905	Silver flowering stage	3.859
	SRR8316906	Gold flowering stage	25.097
	SRR8316907	Gold flowering stage	18.577
	SRR8316908	Gold flowering stage	32.754
SRP132670	SRR6706286	Control	9.887
	SRR6706287	Light intensity 50%	8.229
	SRR6706288	Light intensity 20%	5.643
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.241
	CNS0095593	Slightly white alabastrum(diploid) 2	6.840
	CNS0095594	Slightly white alabastrum(diploid) 3	8.245
	CNS0095595	Whole white alabastrum(diploid) 2	6.796
	CNS0095596	Whole white alabastrum(diploid) 3	0.990
	CNS0095597	Whole white alabastrum(diploid) 4	3.545
	CNS0095598	Silvery flower (diploied) 1	19.967
	CNS0095599	Silvery flower (diploied) 2	18.199
	CNS0095600	Silvery flower (diploied) 3	28.398
	CNS0095601	Golden flower (diploid) 1	23.844
	CNS0095602	Golden flower (diploid) 2	44.220
	CNS0095603	Golden flower (diploid) 3	42.324
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.750
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.357
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.993
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.037
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.050
	CNS0095610	Silvery flower (tetraploid) 1	17.925
	CNS0095611	Silvery flower (tetraploid) 2	15.940
	CNS0095612	Silvery flower (tetraploid) 3	24.570
	CNS0095613	Golden flower (tetraploid) 1	15.930
	CNS0095614	Golden flower (tetraploid) 2	20.814
	CNS0095615	Golden flower (tetraploid) 3	15.385
CRA001975	CRR073297	Stem 1	5.499
	CRR073298	Stem 2	4.664
	CRR073299	Stem 3	2.990
	CRR073300	Leaf 1	4.899
	CRR073301	Leaf 2	7.217
	CRR073302	Leaf 3	3.544
	CRR073303	Juvenile bud 1	2.779
	CRR073304	Juvenile bud 2	2.372
	CRR073305	Juvenile bud 3	7.890
	CRR073306	Third green 1	6.058
	CRR073307	Third green 2	5.587
	CRR073308	Third green 3	8.500
	CRR073309	Second white 1	13.807
	CRR073310	Second white 2	13.223
	CRR073311	Second white 3	13.351
	CRR073312	Silver flowering 1	41.435
	CRR073313	Silver flowering 2	35.361
	CRR073314	Silver flowering 3	23.549
	CRR073315	Gold flowering 1	11.909
	CRR073316	Gold flowering 2	20.101
	CRR073317	Gold flowering 3	25.969
	CRR073318	Tawny withering 1	44.676
	CRR073319	Tawny withering 2	39.750
	CRR073320	Tawny withering 3	37.385