Gene detail

Detail information of GWHGAAZE030275

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14482.1	1.2173E-113	unnamed protein product [Coffea canephora]
COG	YP_004112198.1	4E-74	glutamyl-tRNA synthetase
Swissprot	tr\|Q43794\|SYE_TOBAC	6E-107	Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A068V1N4\|A0A068V1N4_COFCA	5E-114	Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313\|EMBL:CDP14482.1}
TAIR10	AT5G64050.1	2E-79	glutamate tRNA synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	40892532	40897787	+
GWHAAZE00000009	mRNA	40892532	40897787	+
GWHAAZE00000009	exon	40892532	40892733	+
GWHAAZE00000009	exon	40893519	40893626	+
GWHAAZE00000009	exon	40894663	40894784	+
GWHAAZE00000009	exon	40896807	40896925	+
GWHAAZE00000009	exon	40897084	40897132	+
GWHAAZE00000009	exon	40897251	40897352	+
GWHAAZE00000009	exon	40897509	40897611	+
GWHAAZE00000009	exon	40897720	40897787	+
GWHAAZE00000009	CDS	40892532	40892733	+
GWHAAZE00000009	CDS	40893519	40893626	+
GWHAAZE00000009	CDS	40894663	40894784	+
GWHAAZE00000009	CDS	40896807	40896925	+
GWHAAZE00000009	CDS	40897084	40897132	+
GWHAAZE00000009	CDS	40897251	40897352	+
GWHAAZE00000009	CDS	40897509	40897611	+
GWHAAZE00000009	CDS	40897720	40897787	+

Transcript Sequence
>GWHTAAZE030309 ATGGCTGTTCTAATGGGATCGCCATCGCCATGGTTGAGAGCTAGAATTTTCATTCAATCTTCTCATTATCATCGCTACAATAATTACAATTACAGTGCCTCTCTTCCGCGAAGAGGTCTCTCAGCCTTTGCATCGTCGACCGATGCTCCTCCAAGTAAGGTCGCCGGCGAGGTCCGCGTTCGTTTTGCTCCTTCGCCGACCGGTCTAAAGGTGGGAAGTTTGTTCTTCGTACAGAAGACACTGACTTGGAAAGATCCACGAAGGAATCCGAGGAAGCAGTGTTACAAGATCTTTCTTGGCTGGGATGAAGGCCCTGGTGTTGGTGGAGACTATGGCCCGTATAGGCAGTCTGAAAGAAATTTTCTATACAAGCAATATGCTGAGAAACTTTTAAATTCAGGTCATGTTTATCGTTGCTTCTGTTCTAGTGAGGTCTGTTGGAACTTGGACACACTTGGAGATTTTGTCATTATGAGAAGTAACGGACAACCTGTTTACAATTTCTGTGTCACTGTTGATGATGCTACCATGGCTATCTCGCATGTTATAAGAGCAGAAGAGCATTTACCAAATAATCTAAGGCAAGCATTAATATATAAGGCTCTTGGCTTCCCAATGCCTTATTTTGCACACGTTTCTTTAATTCTTGCACCTGATAGGAGCAAACTGTCGAAAAGGCATGGTGCAACTTCGGTGGGTCAGTTCAGAGAGATGGGGTATTTGCCTCAGGCAATGGTGAACTATCTGGCACTGTTAGGTTGGGGCGATGGTACTGAAAATGAATTCTATACCCTTGAACAGTTAGTTGAAAAGTTCTCCATTGAGCGTGTTAACAAGAGTGGAGCCATTTTCGATTCTACCAAATTCAGTTGA

Network for GWHGAAZE030275

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00749.22	tRNA-synt_1c	109	144	1.50E-07
PF00749.22	tRNA-synt_1c	149	288	2.50E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01885	EARS, gltX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0043039	biological_process	tRNA aminoacylation
GO:0006424	biological_process	glutamyl-tRNA aminoacylation
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.751
	SRR3591706	second leaf	7.092
	SRR3591707	mature leaf	9.889
	SRR3591708	Shoot apex	12.168
	SRR3591709	Stem	17.099
	SRR3591710	White floral bud	14.399
	SRR3591711	White flower	14.810
	SRR3591712	Green floral bud	13.807
	SRR3591713	Yellow flower	14.421
SRP173429	SRR8316895	Juvenile bud stage	22.522
	SRR8316896	Juvenile bud stage	31.100
	SRR8316897	Juvenile bud stage	12.763
	SRR8316894	Third green stage	14.330
	SRR8316900	Third green stage	24.077
	SRR8316901	Third green stage	29.482
	SRR8316898	Complete white stage	15.236
	SRR8316899	Complete white stage	34.146
	SRR8316903	Complete white stage	24.064
	SRR8316902	Silver flowering stage	14.947
	SRR8316904	Silver flowering stage	18.654
	SRR8316905	Silver flowering stage	9.036
	SRR8316906	Gold flowering stage	34.321
	SRR8316907	Gold flowering stage	33.375
	SRR8316908	Gold flowering stage	33.492
SRP132670	SRR6706286	Control	21.684
	SRR6706287	Light intensity 50%	26.509
	SRR6706288	Light intensity 20%	25.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.077
	CNS0095593	Slightly white alabastrum(diploid) 2	13.509
	CNS0095594	Slightly white alabastrum(diploid) 3	14.146
	CNS0095595	Whole white alabastrum(diploid) 2	15.156
	CNS0095596	Whole white alabastrum(diploid) 3	8.678
	CNS0095597	Whole white alabastrum(diploid) 4	12.200
	CNS0095598	Silvery flower (diploied) 1	23.474
	CNS0095599	Silvery flower (diploied) 2	14.067
	CNS0095600	Silvery flower (diploied) 3	5.771
	CNS0095601	Golden flower (diploid) 1	14.717
	CNS0095602	Golden flower (diploid) 2	9.614
	CNS0095603	Golden flower (diploid) 3	10.773
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.472
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.638
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.961
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.573
	CNS0095610	Silvery flower (tetraploid) 1	18.040
	CNS0095611	Silvery flower (tetraploid) 2	7.562
	CNS0095612	Silvery flower (tetraploid) 3	11.879
	CNS0095613	Golden flower (tetraploid) 1	10.380
	CNS0095614	Golden flower (tetraploid) 2	14.329
	CNS0095615	Golden flower (tetraploid) 3	15.273
CRA001975	CRR073297	Stem 1	16.942
	CRR073298	Stem 2	15.207
	CRR073299	Stem 3	2.908
	CRR073300	Leaf 1	20.873
	CRR073301	Leaf 2	17.747
	CRR073302	Leaf 3	3.045
	CRR073303	Juvenile bud 1	3.747
	CRR073304	Juvenile bud 2	0.849
	CRR073305	Juvenile bud 3	2.758
	CRR073306	Third green 1	0.674
	CRR073307	Third green 2	1.298
	CRR073308	Third green 3	1.134
	CRR073309	Second white 1	2.222
	CRR073310	Second white 2	0.558
	CRR073311	Second white 3	1.414
	CRR073312	Silver flowering 1	1.426
	CRR073313	Silver flowering 2	0.384
	CRR073314	Silver flowering 3	0.584
	CRR073315	Gold flowering 1	1.445
	CRR073316	Gold flowering 2	4.373
	CRR073317	Gold flowering 3	0.271
	CRR073318	Tawny withering 1	5.997
	CRR073319	Tawny withering 2	11.493
	CRR073320	Tawny withering 3	7.689